Cvir014587.1
Basic Information
- Insect
- Calephelis virginiensis
- Gene Symbol
- -
- Assembly
- GCA_002245475.1
- Location
- NJDC01009486.1:17451-18218[-]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 1 1.2e-07 3e-05 24.3 0.0 1 37 10 45 10 51 0.91
Sequence Information
- Coding Sequence
- ATGTCCAAGAGACCGATCCACCAATACAAAGAGGAACAATTGACAGACGCTATGGCAACGATTAGAAAAGGTATGATAATTAGAGAAGCCAGTCGAGTTTTTAAGGTTCCGCGAGGGACGTTACAGGATCGACTACATTTAAGGGTTCCAGATTTGCCCCGTAAAATGGGACCAGATTCAGTGCTGACGAAATCTGAAGAAACTGCATTGAAAGACTGGTGTATTGCATTAGCGAAATGTGGCTTCCCAGTAAAACGCGATGATCTCCTCAATACCATCCATAATATTATATCTGAAGATAAAAGACCAAACCCATTTGTAAATAATAGACCAGGGAAGAAATGGTATCAATCATTTCTGAGACGAAATCCGGAGTTAAGTGAGAGGACACCTGAAAATATATCTAAAGGTCGAGCCGCTGTAACTGAAGAAGGTATTAGGAAGTGGTTTGCTGAACTTATAAAGCATTTAGAAGATATAAACGCAAGCGATATTTTGACTGATCCTGAGAGAATATTTAACGGTGACGaaactagtttttatatatgcCCCAAGACTGAAAAAGTCATTGCACCAAGAGGTTGCAAAAACGTCTACCAAATTGTAAAAGGCAAGGAAAAAGAAGCTATTACTGTCCTTATATTTATATCGGCATCGGGGAAAATTTTACCTCcttgtgtattttttccatACGTAAGACCACCAAATAAGTTATTAACAGTATACCTGATAGATGGTTACTGGGAAAGTCAGAAACAGGTTGGATGA
- Protein Sequence
- MSKRPIHQYKEEQLTDAMATIRKGMIIREASRVFKVPRGTLQDRLHLRVPDLPRKMGPDSVLTKSEETALKDWCIALAKCGFPVKRDDLLNTIHNIISEDKRPNPFVNNRPGKKWYQSFLRRNPELSERTPENISKGRAAVTEEGIRKWFAELIKHLEDINASDILTDPERIFNGDETSFYICPKTEKVIAPRGCKNVYQIVKGKEKEAITVLIFISASGKILPPCVFFPYVRPPNKLLTVYLIDGYWESQKQVG
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01246777;
- 90% Identity
- iTF_00255792; iTF_00276282; iTF_00276279; iTF_00276283;
- 80% Identity
- -