Cvir015186.1
Basic Information
- Insect
- Calephelis virginiensis
- Gene Symbol
- -
- Assembly
- GCA_002245475.1
- Location
- NJDC01016844.1:1-477[-]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 1 8.1e-08 2e-05 24.8 0.0 5 40 22 57 18 59 0.91
Sequence Information
- Coding Sequence
- ATGCCTAGAAACTACCGACCCATACCGGGAGCGAAAtctcttaaaaaatatgacgtAGCCATAATTAATCAAGCTTTACTAGACATATCAGCTGGAAACACATCGATACGATGTATTGCTGAGAAATATGGAATTTCATATTCAGTTTTACAGAGACGCAATAATAAATCAATGAAACCCCATGGTGGCCAAACGGCAATGACACCAGAGGCCGAggcttttattgtaaaaaaattaaatatttgtgcgGATTGGGGCTATCCGTTGGACCAAAACGATTTAAgatatattgttaaaatgtatCTAGATACATCAAACATTACTGTGAAAAGGTTTAAAAACAACTATCCAGGGCCTGATTTCGTTGAGAGCTTCCTGAAACGACATAGTGACAAAACATCAAACGTTCGAgagcagaagtaaaaaaaaaaagtatcttcacgcccatatccccgaagaggtaggcagaggtacaac
- Protein Sequence
- MPRNYRPIPGAKSLKKYDVAIINQALLDISAGNTSIRCIAEKYGISYSVLQRRNNKSMKPHGGQTAMTPEAEAFIVKKLNICADWGYPLDQNDLRYIVKMYLDTSNITVKRFKNNYPGPDFVESFLKRHSDKTSNVREQK*KKKVSSRPYPRRGRQRYN
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00256833; iTF_00383573; iTF_00282233;
- 90% Identity
- iTF_00237509;
- 80% Identity
- -