Cvir024317.1
Basic Information
- Insect
- Calephelis virginiensis
- Gene Symbol
- -
- Assembly
- GCA_002245475.1
- Location
- NJDC01003776.1:5388-16918[+]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 5.2e-09 1.3e-06 28.6 0.0 1 38 15 52 15 59 0.90 2 2 7.9 1.9e+03 -0.8 0.1 15 24 124 134 122 135 0.81
Sequence Information
- Coding Sequence
- ATGCCGCATAATTATAAGCGTAAAACTGATCGCCAATCTTGGAGTGAGGAATCTATGCGTAAAGCTATAGAAGCAGTTCTCAGTAACAAAATGGGCTGGCTTTTGGCGTCTAAAACATTTGGAGTGCCACAAGCAACCCTCAGAAGACGTGCTTCGAATAGTAACAAAACGTTGGAGTCCAGTGCAAAGGGTCTAGGATCTTGGAAAGCTACTTTTCCGCCTGATGTGGAAAGAAAATTAGTTGAGCATTTGAAATTACTTGAATCTCGTTTGTTTAGACTGACACGAGCTTCTGTTCAAGAATTAGCATTTGAGATGGCTGAAAGAAACGGTTTCGCCCATAAGTTTAACCTTCAAAAACAGAAAGCAGGACAAGAATGCAGCTTCAACCGAGCGTCACGTCGTCAGTCGCCGATGTCAAACCTGAATTCAGATTTTAAATCCTCGGAGGACTTGCCGCTACCGGTGCCGATCTGTCACCGTTGTTGTAGGGGCATTCTCATATtctttaaatga
- Protein Sequence
- MPHNYKRKTDRQSWSEESMRKAIEAVLSNKMGWLLASKTFGVPQATLRRRASNSNKTLESSAKGLGSWKATFPPDVERKLVEHLKLLESRLFRLTRASVQELAFEMAERNGFAHKFNLQKQKAGQECSFNRASRRQSPMSNLNSDFKSSEDLPLPVPICHRCCRGILIFFK
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -