Cvir000137.1
Basic Information
- Insect
- Calephelis virginiensis
- Gene Symbol
- -
- Assembly
- GCA_002245475.1
- Location
- NJDC01065111.1:1-934[+]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 3 2.1e-09 5e-07 29.9 0.0 1 37 11 47 11 52 0.93 2 3 2.5 6.1e+02 0.9 0.0 13 22 117 126 116 129 0.89 3 3 3 7.5e+02 0.6 0.1 14 23 127 135 122 137 0.73
Sequence Information
- Coding Sequence
- AAAGTCGGAATTCGTCCCCGAGCAGAATGGACGGAAGAGTCTTTAATAGCTGCCATGGAAGAAATGTCAAAAGGCATTCTTGGCATTAACCAAATTTCTCGACTATATGGAATTCCTACGAGAACATTGAGAAGAAGATTTGCAAACAAACACTGGGTAAGAAAACATCCTATTCTTGACTTCAAAAATGAAAAACGGTTGGTGTTACACATACAAAAGTTGGAAAAAGCTGGATTCCCGCCAACTAAAGATATGATAAGGCGACTGGCTTTTGAGTTGAATATAGAAACGTGTTTTGACAAGGGGAGCAGAAAGGCTGGACCGCATTGGTTAAAATCATTTTTGGAACGTAATAAAGAACTTAGTATTCGCCAAGCTGAGGGATTATCAGTTGCAAGAGCACAGGGATTAAATAGAGAAGAGATGAACAAAATGTTTGACCTGTTGCTGAATGTAATGACGGAAAACGATTTACTAGACAAACCAGACAAAAT
- Protein Sequence
- KVGIRPRAEWTEESLIAAMEEMSKGILGINQISRLYGIPTRTLRRRFANKHWVRKHPILDFKNEKRLVLHIQKLEKAGFPPTKDMIRRLAFELNIETCFDKGSRKAGPHWLKSFLERNKELSIRQAEGLSVARAQGLNREEMNKMFDLLLNVMTENDLLDKPDK
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -