Cvir003518.1
Basic Information
- Insect
- Calephelis virginiensis
- Gene Symbol
- -
- Assembly
- GCA_002245475.1
- Location
- NJDC01004641.1:114038-114442[+]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 1 9.8e-11 2.4e-08 34.2 0.0 4 40 18 54 16 57 0.94
Sequence Information
- Coding Sequence
- atgTCTCGTAAATATAAACGCAAAACTCTTCGAGCTTCTTGGAGCGCACAGGATTTGGATGAAGCAATGCGATGcgtacaaagtaaaaaaatgcgaCTGAATCAAGCTTCAAAGCATTTTAATATTCCATCTCGAACCTTAAGAAGGTATCTTAGAACAGGTAGATCAAAAGTGCCTCTTGGACGTCATCCAGTATTTTCTGTAGAGTACGAAAAAAAGTTAGTTGCTcacattaaaaaactaaaaagagcCGGAGTCGTCCCTGAAAAAAAAGACATGAAAGAAATGGCTTTTCAGCTAGCTAAAAAGCTGAATATAAAAACCCCATTTTCAGAAAAGTCTGAGTCAGCAGGAAACGCCTGGTTTACTGGATTCATGAATCGCAACTCTGAATTAaggaaatga
- Protein Sequence
- MSRKYKRKTLRASWSAQDLDEAMRCVQSKKMRLNQASKHFNIPSRTLRRYLRTGRSKVPLGRHPVFSVEYEKKLVAHIKKLKRAGVVPEKKDMKEMAFQLAKKLNIKTPFSEKSESAGNAWFTGFMNRNSELRK
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01503775;
- 90% Identity
- -
- 80% Identity
- -