Cvir005358.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Calephelis virginiensis
Gene Symbol
-
Assembly
GCA_002245475.1
Location
NJDC01001835.1:375788-379326[-]

Transcription Factor Domain

TF Family
HTH
Domain
HTH_psq domain
PFAM
PF05225
TF Group
Helix-turn-helix
Description
This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 1 8e-11 2e-08 34.4 0.0 3 36 23 56 21 59 0.92

Sequence Information

Coding Sequence
atgaaaactaacaAGAAGATTGAAAATAAAGGAAAACGAAGAGAAGAACGAAAGAAATATGACCTGGAGAACTTAAAAAAGGCCCTACATGCAGTTAAAAGTGGAATGAGCAAGAAACAAGCAGCTAGGGAGTATCAGGTACCTAGATCAACCATACAGTTTCGGCTTAATAATCCTGACAAAATAAATCCTCGCCCTGGTCCTACTACAGTATTAACAGACGAGGAAGAAAATGTTCTCGTTAATTGGATTATACAAAGTTCGAAAAAAGGATTCCCTCGCCGGAAAGAAGATATTCAGTATGGTGTCTctgattttttaaagaagaataATAGGCTTAATCCTTTTAAAAATGACGTTCCAGGTGACAAatggttaaaattatttttaaaaagacatcCTGAGGTTGCTGTTCGTACTCCCGAATCTGTCACAGCTGCAAGCTCTGTGGTTTCGGAAAATGATATTAGAGCTTGGTTTCATGGTattcaaacatatttaaaagataatgcAATGTTCGACATTTTATCAGATCCCAGTAGAGTTTTTAACGGCGACGAAACAAATTTCTTGCTATGTTCTAAGACAGGTGTGGTTCTAGCGTTAAAAGGCGATAGAAACGTTTATGAAATAGACAGAGGTCAAGCGAAATCTTCCATAACAGTAATGTTTACGTTTTGTGCCAACGGCGATTTAACCCCTCCAATGATAATTCTGCCTTATAAGCGCCTTCCTGGAGATATAGCTACCAAAGGCCCAGAAGAATGGGGTATCGGGTTAAGCGATAATGGCTGGATGAAGGCggaattattttatgattacataaaaaatgtactgcatccatatcttttaaaaaagggtcaaatgttttctattatattatttgtagatGGCCACAAAACTCATCTCACGCTGCAAGTTAGTGAACTTTgcactaatttaaaaattatacttatcgCTCTTTACCCTAATTGCACTCGTATATTGCAACCTGCTGATGTAGCAgcattttttcctttaaaatgtgCCTGGAAGCAAAGTGTTCTTCGATGGAGGCGTGAACACCCAACACAGGCTCTGACCAAAGCAGATTTTGTTTCGATTTTGAAAACTGCCATAGATGTATCTTTGAAACCTGCCACTATTAAAAATGGTTTCAAAGCTTGCGGTCTCTTACCGTGGAATCCTGATGCTTTGGATTATACAAAATGCTTGGGCAATTCCAAGGGAAAAGAAACAAGTCAGCCTCACTGTATAAATATTGATGCAAACGATAGAAACCGAATGACGAAagaagattttattaatattgtcggaatggtaaatataaataaactaaacaaaaaagatatagatTTAATACTGGATGCACCTAAACATCTCCAAAATCTTTGGGAGTTTTTTGGAAATGCCTTACCAGGATCAATAGAAACAAATATTGAACCTCGTGCGATTTCTAATAATGAAACTTTGGAAAGCCTAATAGTACAAGAACACTTGGATattgaaaacataaatgttattttcgCAGATAATGTTGAAGAAAACAATGAAATTTCTAACATTCCATATTCTCATGAAATTGAAATACAAAACACGAGCGAGCCTAACTTACCTGTCGGAAAAGAAACAAGTCAGCCTCACTGTATAAATACTGATGCAAACGATAGAAACCGAATGACGAAagaagattttattaatattgtcggaatggaaaatataaataaaataaacaaaaaagatatagatTTAATACTGGATGCACCTAAACATCTCCAAAATCTTTGGGAGTTTTTTGGAAATGCCTTACCAGGATCAATAGAAACAAATATTGAACCTCGTGCGATTTCTAATAATGAAACTTTGGAAAGCCCAATTGTACAAGAACACTTGGATattgaaaacataaatgttGTTTTCGCAGATAATGTTGAAGAAAACAATGAAATTTCTAACATTCCATATTCTCATGAAATTGAAATACAAAACACGAGCGAGCCTAACTTACCTGTCGTCTCGGTGATTTCAGAACAACATTTAACATTGCCGGCAAATAAGATCGCATCTACTTCACTGCCCAAAActccaattaaaataaatttgacaccAGTACAGCTCAATGATATTCTCATCCTCTCTAAGACACCAGAACGCAAAGGAACCAAAAATTCAGAAAAGATACCCTTTGTTTTAACATCTGAAGAATGGCAACGAATTAATACAGAAAAGAAAAAGGCCAAAGACCTAAAAGAAGAAGGCATTAAGAAAAGGAAATTAGAGCGAgaacaaaaaaagttacaaaaggtTCAAACACAAGGAAAAGGAAAGGGTAAAGGGAAGAAAACTGGAGACATCATacagaatgttaaaaaaaaattaatgactaAGGAATTTTACTCACCCTTACCCCACGTTAACGATAAAGCTCAAAGTATACAAAATAGAGCtcaatttgatttgattgacCCACCTATTGAAAAGCAAGAAGATTACAGACTTCCTTCTACTTCGAGAgggatagtaaaaaaatcttttacagcaagtgaaattttcaaaatactAACAGATTCAGATGAAGATAATTAA
Protein Sequence
MKTNKKIENKGKRREERKKYDLENLKKALHAVKSGMSKKQAAREYQVPRSTIQFRLNNPDKINPRPGPTTVLTDEEENVLVNWIIQSSKKGFPRRKEDIQYGVSDFLKKNNRLNPFKNDVPGDKWLKLFLKRHPEVAVRTPESVTAASSVVSENDIRAWFHGIQTYLKDNAMFDILSDPSRVFNGDETNFLLCSKTGVVLALKGDRNVYEIDRGQAKSSITVMFTFCANGDLTPPMIILPYKRLPGDIATKGPEEWGIGLSDNGWMKAELFYDYIKNVLHPYLLKKGQMFSIILFVDGHKTHLTLQVSELCTNLKIILIALYPNCTRILQPADVAAFFPLKCAWKQSVLRWRREHPTQALTKADFVSILKTAIDVSLKPATIKNGFKACGLLPWNPDALDYTKCLGNSKGKETSQPHCINIDANDRNRMTKEDFINIVGMVNINKLNKKDIDLILDAPKHLQNLWEFFGNALPGSIETNIEPRAISNNETLESLIVQEHLDIENINVIFADNVEENNEISNIPYSHEIEIQNTSEPNLPVGKETSQPHCINTDANDRNRMTKEDFINIVGMENINKINKKDIDLILDAPKHLQNLWEFFGNALPGSIETNIEPRAISNNETLESPIVQEHLDIENINVVFADNVEENNEISNIPYSHEIEIQNTSEPNLPVVSVISEQHLTLPANKIASTSLPKTPIKINLTPVQLNDILILSKTPERKGTKNSEKIPFVLTSEEWQRINTEKKKAKDLKEEGIKKRKLEREQKKLQKVQTQGKGKGKGKKTGDIIQNVKKKLMTKEFYSPLPHVNDKAQSIQNRAQFDLIDPPIEKQEDYRLPSTSRGIVKKSFTASEIFKILTDSDEDN

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
-
90% Identity
-
80% Identity
-