Cvir006661.1
Basic Information
- Insect
- Calephelis virginiensis
- Gene Symbol
- -
- Assembly
- GCA_002245475.1
- Location
- NJDC01000897.1:123130-153046[+]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 4 0.0072 1.8 9.0 0.0 3 38 415 451 413 458 0.88 2 4 0.015 3.8 7.9 0.0 3 42 467 506 465 509 0.92 3 4 0.0094 2.3 8.6 0.0 3 37 520 555 518 562 0.91 4 4 0.018 4.4 7.7 0.0 3 38 567 602 565 607 0.90
Sequence Information
- Coding Sequence
- ATGACATCAACGGAAGAAGGAGATTCTCCTGCAGAAGAGATACCCGCGGGAAATCCTGATGAACTTACAAAGAATCCCACAGCCCTAAAagatgcgCATGAACAAATGGCTACACTAGATGTCTTGGTTTGTGGACAATGTCATTCTGCATTTCACTTTGTTGAAGAATTTAAAGATCACAAGGACGGTACAAACTGTACTGCAAAATCACCTGTAAGGGATAgtaatgaAAGCAAAGCTCAAGTGTGGGCATTTCTGTTGTGGAAGTGTTCATCAGTGCGTGATGGGTCTACATCCAATGCTGACAACAGTTGGAAGCTGTACCAACAGTGGTGTAGGATGCCGGAAGCTCAAAGGACTGCTTGGATTACAGCGGGCTCCAATGTTCAATCTCTCTCCAAGTTTGCCCACGCTAAAGTGatggAGTTAAAAACAGATGATCAACAGGTTCCTGTTCAAACTCCAACAACACAAGAAATTAGAAAACGTGGAAGACCCAAAAAGATTAAAGCAGAAGACAGTGAAACTCATCCATCAGGAGAAGAAAGTGATGATGTTAAAGCAGTTACTCCCAAGGCTGCTACGAAACCGCAGCTTCCTAAGGAGTCGACGGAGTCGGTGCGGCTGGCGCAGGAGCGCGTGCCGCCGTCGGAGCGGATCGCGCGGCGGTCGGACGGTCGGGGGGCGGCCGACGACGGCGCCGGCACCGGCGAGTTCGTCGTCGAGAAGATCCTCGCCAAGCGGTTCAACCCGCGCCGTAAGCAAGGTGCTCACAAGGTACCTCTCCAAAACGAAGTATGGGTGCAGGAGTCGACGGAGTCGGTGCGGCTGGCGCAGGAGCGCGTGCCGCCGTCGGAGCGGATCGCGCGGCGGTCGGACGGTCGGGGGGCGGCCGACGACGGCGCCGGCGCCGGCGAGTTCGTCGTCGAGAAGATCCTCGCCAAGCGGTTCAACCCGCGCCGCAAGCAGTACGAGTACCTGCTCAATGAGCAAAACACGTGGGAGCCAGTGGAGAATATGGAGACGTGTAAACATTTATTGGAAGCGTTCGAGAAGCAATTGGCGCGGCAAAAAGAGCTGAAGGCACTTCGGGCGCAACAGCTGCAGCAGCAACAGCATCCTGTTAAACAAATAAGCACACCAATGCCACAAGTTGTGAAGCAGATTGTCAAGAAATCAGATAGCCCAGCGCTAACACCGACAGGGATTATGTCACGGCCTAGAAGAAGGCAGTATTCGGCCACAGATATGGATCTGGCATTGGATCTAGTTCAGAACCACCATAAATCACTATATGCTGCAAGTAAAGTAACCGGTGTACCATGGAGCACCTTAAAGGACTACATAAAGAATGAAGACAAaaaTATGTCGCGGCCTAGAAGAATGCAGTATTCGGCCACAGATATGGATCTTGCATTGGATCTAGTTCAGAACCACCATAAATCACTATATGCTGCAAGTAAAGCAACCGGTGTGCCATGGAGCACCATAAAGGACTATATACGAAAAGAATACAAAATTATGTCGCGGCCTAGAAGAAGGCGGCAGTATTCAGCCACAGATATGGATCGTGCATTAGATCTAGTTCAGAACCACCATAAATCACTATATGCTGCAAGTAAAGCAACCGGTATACCATGGAGCACCATAGAGGACTATAGAATTATGTCGCGGCCTAGAAGAAGGCAGTATTCGGCCACAGATATGGATCGTGCATTGGATCTAGTTCAGAACCACAATAAATCACTATATGCTGCAAGTAAAGCAACCGGTGTACCATGGAGCACCATAAAGGACTATATAAGAAAAGAAGACAAGTCACTGTTGAAacGTCTACAACGTACAAGCAAAGTGCGAGCATTAGACCAAGTGAAAGCGTGGTGCGGTGCTGCCGACGATGAGCCTGCtgctaagaaaattaaaaaagaagccTCTAGCGAGGATGAAGATTATTCTGACGAAGAGTCTGTTAAAGGGGCAGGGACAGTGGATAGGAAAGTACTTAATGGACAGTCCTCTCCAAAATCGAATATAGATCCAGAATTGGTGAAATCTCTTGGTCTCGGTGGGAAGGGCATGCCAAACATCAAGGGTGTCATTAAAGTAGACCCTAAACATATGCCGAATTTGACAACAGGTGTATACATAATGTCAAAGAGCTCAGGAATAATGAAAATAGACTCACCAGGCAAACTGGGACCGGGTTTGAATATAGATCAAGATGTAATCCGCAAACAGATCATGGCAGCTAAACAAAAAAGAATGGAGGAAGCAAAAAAAGCAGCGGCTAATGCCGTTAATAGTGGACAGGTCAAGAAGACATTTTCTGCTGGGGGTCAACAGGTTACAGAGAAAACTATCATCACTCCATCGGGCCAAAAAATCATACAGAGAACTATTCAACGGCCAGTTGGAAATCCAGAGGGGAAATCTCCTGTTACAATTCTCAATAAGAAACTTCAGGGCGACAGTCTGCTGCGGCGCGGCGGCGGCACCCCGCGCGGTCGCGGCCGCGGCATGCCCGCCACCGCCACCGCCACCGCCGGCTGGGTCCGGCAGAAGGAGAAGACTGTCTCATTCGAATTTGAcaagTGGGAGCAGTCGTCGGAGTCATCAGACGGTGTGGAGGACCCGTTCCCGCGGGCGCTGGGCCCGCTACCGCCGCCGAGCCCCAAGCGCGAGCTGACGCTGTGCCCGCTGACGGGCAAGCGGCTGGCACGTGCCGAAGGAGAGCCAACGCCGCCGCCCACTCCCCCGCCGCCGTCGCCCCCGCCCGCGCCACCCACGCCGCCTCCCACGCAGCAGCCCACCATGCTCATGAAGGTCGAGATGTCCCCAGGAGGTACCACCGGAATGTTAGTACGGGGTGATAGTGCACAACCATCCCTACCGGTCCTCACAGACGAAGATGGAGCCGAGGTAAAAGTAGAAGCAAGTACTGTTAAACAATTGTTGGACGAAGGTGTGGGTGATGAAGACGGCGAAGAAGTCAGTCTTCTACACACGGGCCACCCATCCATCATGATACGAGGGGAAGATGGAGTTCTGTAtcagGTTGCCGGTGAGAATGAAGCAGGACAAACGTTGTTGGTGGCAGCGGAAGGTGTCGAGGGGGCTGTGGAAGGAGTGGAGGGGGCCGTCGAAGGAGAGGGAGAAGGAGGAGTCATGTATGTCACCAGGGAGGATGGGCAGacTTTGCTGGTCGCGACACAGGGGGTAGAAGGAGGCGTACAAGGAGTCGAAGGAGCAGAGGGTGAAGGTGAAGGAGTCACATACGTTACGAGGGAAGATGGTCAGTGTTTTATTGCTCCAGGTGGCACGAGACGAGTGGTACTATTACTACCGGACGGTAGTTACACAATGACGGAACTAGATAAAGAACAGTACGAATCAATAACAGAAGCTGGCAAAGCGCAAGAGTGA
- Protein Sequence
- MTSTEEGDSPAEEIPAGNPDELTKNPTALKDAHEQMATLDVLVCGQCHSAFHFVEEFKDHKDGTNCTAKSPVRDSNESKAQVWAFLLWKCSSVRDGSTSNADNSWKLYQQWCRMPEAQRTAWITAGSNVQSLSKFAHAKVMELKTDDQQVPVQTPTTQEIRKRGRPKKIKAEDSETHPSGEESDDVKAVTPKAATKPQLPKESTESVRLAQERVPPSERIARRSDGRGAADDGAGTGEFVVEKILAKRFNPRRKQGAHKVPLQNEVWVQESTESVRLAQERVPPSERIARRSDGRGAADDGAGAGEFVVEKILAKRFNPRRKQYEYLLNEQNTWEPVENMETCKHLLEAFEKQLARQKELKALRAQQLQQQQHPVKQISTPMPQVVKQIVKKSDSPALTPTGIMSRPRRRQYSATDMDLALDLVQNHHKSLYAASKVTGVPWSTLKDYIKNEDKNMSRPRRMQYSATDMDLALDLVQNHHKSLYAASKATGVPWSTIKDYIRKEYKIMSRPRRRRQYSATDMDRALDLVQNHHKSLYAASKATGIPWSTIEDYRIMSRPRRRQYSATDMDRALDLVQNHNKSLYAASKATGVPWSTIKDYIRKEDKSLLKRLQRTSKVRALDQVKAWCGAADDEPAAKKIKKEASSEDEDYSDEESVKGAGTVDRKVLNGQSSPKSNIDPELVKSLGLGGKGMPNIKGVIKVDPKHMPNLTTGVYIMSKSSGIMKIDSPGKLGPGLNIDQDVIRKQIMAAKQKRMEEAKKAAANAVNSGQVKKTFSAGGQQVTEKTIITPSGQKIIQRTIQRPVGNPEGKSPVTILNKKLQGDSLLRRGGGTPRGRGRGMPATATATAGWVRQKEKTVSFEFDKWEQSSESSDGVEDPFPRALGPLPPPSPKRELTLCPLTGKRLARAEGEPTPPPTPPPPSPPPAPPTPPPTQQPTMLMKVEMSPGGTTGMLVRGDSAQPSLPVLTDEDGAEVKVEASTVKQLLDEGVGDEDGEEVSLLHTGHPSIMIRGEDGVLYQVAGENEAGQTLLVAAEGVEGAVEGVEGAVEGEGEGGVMYVTREDGQTLLVATQGVEGGVQGVEGAEGEGEGVTYVTREDGQCFIAPGGTRRVVLLLPDGSYTMTELDKEQYESITEAGKAQE
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -