Cvir014926.1
Basic Information
- Insect
- Calephelis virginiensis
- Gene Symbol
- -
- Assembly
- GCA_002245475.1
- Location
- NJDC01000139.1:127892-131800[+]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 1 2.8e-13 6.8e-11 42.3 0.0 3 42 17 56 15 59 0.92
Sequence Information
- Coding Sequence
- aTGCCTCGAAAACGGGACAGAATCACGGAGAAGGGTCAATGGAGTCTGGATGCACTAGATCGAGCTATCAAAAGAGTTAATGATGATGGAATTTCTCTGCATAAAGCATCCCAAGAATTTAACATTCCATATAGTACTTTGCAAAAAAGATATCGCAAATCAGAACAATCAAATCCTCGTCTCGGAAGAAAACCAGTATTTTCTCCTGCTCAAGAACGAATTCTGGCTGATCACTTAATTCATATGACGAATCTTTTCTTCGGATTAGACGCAACAAAATTCAGAAAAATAGCATACGAGTGTGCCGAACAATTGAAGATAcctcataattttaataaagaaagtaaGTCTGCTGAACCAGATTGGCTTGAAggatttttgaaaagaaatactAATATTAGTGTTCGCAAACCGGAGTCGACAAGTATTAATAGAATTGAGGGCTTCAACAAAGAAGAAGTAGAACTATTTTACAGAAATCTTGAAGAacttatgacaaaaaataaatatgaagcacatcaaatatttaatatggaTGAGACGGGAgTCATCATGGATTTTGATTTGATAGTATATATAGATGGAAAAGCTATATGTATTTCGTCCGATGATAGTGGGAgttttgaaaatgatttttctATTGATTTGGTGAGAGTCTTTGATGGCAACGTTTTAAGaatttgtttcattattaaTGTCATTGTTGTAGATggtagatttaaataa
- Protein Sequence
- MPRKRDRITEKGQWSLDALDRAIKRVNDDGISLHKASQEFNIPYSTLQKRYRKSEQSNPRLGRKPVFSPAQERILADHLIHMTNLFFGLDATKFRKIAYECAEQLKIPHNFNKESKSAEPDWLEGFLKRNTNISVRKPESTSINRIEGFNKEEVELFYRNLEELMTKNKYEAHQIFNMDETGVIMDFDLIVYIDGKAICISSDDSGSFENDFSIDLVRVFDGNVLRICFIINVIVVDGRFK
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -