Cvir009814.1
Basic Information
- Insect
- Calephelis virginiensis
- Gene Symbol
- -
- Assembly
- GCA_002245475.1
- Location
- NJDC01000696.1:687305-699338[+]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 5 9.6e-11 2.4e-08 34.2 0.0 4 38 175 210 173 215 0.91 2 5 2.2e-11 5.4e-09 36.2 0.2 1 39 226 264 226 267 0.94 3 5 2.7e-06 0.00066 19.9 0.2 2 31 282 310 281 313 0.93 4 5 0.0041 1 9.8 0.0 28 45 363 381 362 381 0.96 5 5 4.7e-18 1.2e-15 57.6 0.0 1 42 388 430 388 433 0.95
Sequence Information
- Coding Sequence
- ATGCCAGGGCACGAGGTGTCCCAGGTGAAATGTGAACCAACCTCAGATGACGACGAATGTTCACAATATTCTGGCAGTTATAGTAGATACCAGCTTTCTTCGTTGGAACAGACACAGATTAAGTTGGAACAACTTAAGCACAATGGCTTGGAGACATCCCATCTTTTGCAGCACTTACAGAGCGAAAGAGATTCCCTGGAAGAGTTGGTGCCGGCGCCTTCTGGACCGGCAGCCACGCTCGTCCGCGAACTCCCGCTTCTGACGTCGGAGTCTTCGCTAGCTACCCTCGAACCAGCCGTCGATGGCAATGTACTTggTTCAGCACTCATCAAGCGACACGTGAAATTAATGAAAGGTGAAGAAGTGGCAGATTCGGCTAAATTTGTGACGCTCATGGCCATGAAGGATGAACCTGTTTCAGAGGGCGAACATCATCACCAAAGCGGGGATGACTTAAGTGATTCCAGTAGTCCTCTATTGGAGTCCGTGAACCGAGGAAGTCCTAAGTCCTGGACACAGTGCGACATGGAAAACGCGCTGGAGGCTTTGAGGAACCGTCAAATGAGCTTAACAAAGGCATCAGCGACATTCGGAATACCGTCGACGACGCTTTGGCAGCGGGCGCACAGGCTGGGGATAAACACGCCAAAAAAAGATAGTGTTTCCAAAACTTGGAGTGAGGAAGATTTGAAGGGAGCGTTACACGCACTACGAGCAGGCGCCATTTCTGCCAATAAAGCCAGCAAAGcttatgGTATTCCGAGTAGCACGCTCTACAAGATAGCGCGGCGTGAGGGCATCCGGCTGGCGGCGCCTTTCAACGCGGCTCCCACGGCGTGGCGGCGCACCGACCTCGCCCGCGCCCTCCGCGCCGTGCGCGCCGGCGCTGCTGTGCAGCGAGCGGCCGCTGCGCACGGCATACCCACCGGTAACCTCAACATACCCACAAGTGACCTCATTATACCCACCGGTAACCTCAACATACCCACAAGTAACCTCATTATACCCACCGGTAACCTCACCATTCCCACCGGTAACCTCACCATACCCACCGGTAATCTCACCATACCCACCGGTAACCTCACCATACCCACCGGAACTCTGTACGGCAGGTGTAAGCGTGAAGGTATCGAGCTGTCCAGGTCGAACCCAACGCCGTGGTCTGAAGACGCCATGACCGAAGCTCTGCAGGCTGTCAGGGTGGGCCAGATGTCGATCAACCAGGCAGCTATCCATTATAATTTGCCCTACTCCTCACTCTACGGTAGATTCAAGAGGTGGAAATATCAGCCTCTCCAGTTTCAACAGCACCAGCCAATTCCGCAAGAGGTGTGTTATCCAGAACCGGAGAGTCAGCATCAGGAACATTTGGCCCAGCCACCATCTGAATTAGATTCGTCATTCCTTCGCACCATCAACGCAATAGATTCTTATGGACAAACATTTTATGCAGAATGTAATGTAGAGAGCTGA
- Protein Sequence
- MPGHEVSQVKCEPTSDDDECSQYSGSYSRYQLSSLEQTQIKLEQLKHNGLETSHLLQHLQSERDSLEELVPAPSGPAATLVRELPLLTSESSLATLEPAVDGNVLGSALIKRHVKLMKGEEVADSAKFVTLMAMKDEPVSEGEHHHQSGDDLSDSSSPLLESVNRGSPKSWTQCDMENALEALRNRQMSLTKASATFGIPSTTLWQRAHRLGINTPKKDSVSKTWSEEDLKGALHALRAGAISANKASKAYGIPSSTLYKIARREGIRLAAPFNAAPTAWRRTDLARALRAVRAGAAVQRAAAAHGIPTGNLNIPTSDLIIPTGNLNIPTSNLIIPTGNLTIPTGNLTIPTGNLTIPTGNLTIPTGTLYGRCKREGIELSRSNPTPWSEDAMTEALQAVRVGQMSINQAAIHYNLPYSSLYGRFKRWKYQPLQFQQHQPIPQEVCYPEPESQHQEHLAQPPSELDSSFLRTINAIDSYGQTFYAECNVES
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -