Cnem006739.1
Basic Information
- Insect
- Calephelis nemesis
- Gene Symbol
- -
- Assembly
- GCA_002245505.1
- Location
- NJDD01006924.1:12405-26111[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 18 0.1 8.4 7.7 2.9 1 23 84 107 84 107 0.97 2 18 0.0017 0.14 13.3 1.0 2 23 202 223 201 223 0.97 3 18 9.9 8.3e+02 1.4 3.0 1 23 229 251 229 252 0.93 4 18 0.25 21 6.4 4.5 2 22 487 507 486 507 0.96 5 18 0.75 63 4.9 0.3 2 23 755 776 754 776 0.95 6 18 0.018 1.5 10.0 0.3 2 23 848 869 847 869 0.96 7 18 0.65 54 5.1 0.5 1 23 877 899 877 899 0.95 8 18 0.067 5.7 8.2 3.5 1 23 935 957 935 957 0.95 9 18 2.5e-05 0.0021 19.0 2.0 1 23 965 987 965 987 0.99 10 18 0.25 21 6.4 2.3 1 23 1068 1090 1068 1090 0.98 11 18 1.5 1.3e+02 4.0 1.0 1 23 1145 1167 1145 1167 0.95 12 18 0.1 8.8 7.6 0.2 1 23 1173 1195 1173 1195 0.96 13 18 0.0062 0.52 11.5 0.7 1 23 1262 1284 1262 1284 0.95 14 18 0.013 1.1 10.5 1.1 1 23 1290 1312 1290 1312 0.96 15 18 0.0066 0.55 11.4 2.6 1 23 1402 1424 1402 1424 0.97 16 18 0.00017 0.014 16.4 1.4 1 23 1430 1452 1430 1452 0.99 17 18 2.6 2.2e+02 3.2 1.0 1 23 1540 1562 1540 1562 0.95 18 18 0.11 9 7.6 2.5 2 23 1575 1596 1574 1596 0.98
Sequence Information
- Coding Sequence
- ATGCTACAACAGATGTCCTCGCCGCCGAGCGCGCAACTCGGTGAGGTCGCCACTCTCCCGCGCCACATTGAAGGCCGACTCTGCGGCGACGCTTCTTCAGAGGCCTCTTCGGATGCGGCGGAAGATTTAGAACTGCCCGAGTGCAAAATCAAACGCAACTACAGTTGTACAAAGTGTGCATTTTACACGCAGAATCCTCGCGCGTTTTTGGTGCATTCCAGGGACGTTCACTTCGAGAAGATTAGGATTTATGATTGCCCTCATTGTATATACGCTTCCAGACACCAACAGAAGCTGACGAGACACGTCAAGATGGTCCACGAATCCTCGTCCAGGGATGAGCAGGCGCGAGTCCTCCCTGAAACAAATGAACCCATAGAAAGAATAGAAGATTTACTTGAAGAAGTCGAAGAATGTGAAGACATGGATATTGATGACGGCAACGAGGACCACGATCGCTTGGATGGCGAGGGATTGGTAGATGTGACATCCAATTTggcgaaaaataaaaacaatttttactcttGCAACAAATGCCATTATGTGACCCATATACGGACGCGCTATACCAAACATGTAAAATACCATTCAATGCCAATGATAAAGTGTACGATGTGTGACTTTCGGACTCCTTACAAGTGGAACTTGGATAGGCACATGAAGAATCATGGAGGCACTGGTAGCTTCCACTGTTCGATGTGCAATTTCACAGCTGATATAAGACAGAGTTTGACGGTGCATGAGATGAATCACCACACGCCGCCAGTCGGCCAGTCCGTTGTTCGCCGACGTAACAGAGTGGGTGCCAGTGATATGTCCGGTGCCGTTGAACCCGTTGATGAGAATTCGCTTATAATAAAGGAAGAAGAGGGAAGTGGAGATTCGCGGTCCTCTCTGTGTGCATCGGATATGGGTCTTCAATACACGCAAACAGACAGGGAAATGTCTAATTGCCACAGCGATTCCAATGAGGCTACTACTTCGgacgcaataaataaaaatgaagcaaATAGTTTAAAACAGTCACCTGGTCATTCGCCAAACAGTATATCAGATGACAAAAAGCAAAGAAAAATTCCAAGACCTATTCCTCAACTTATTCCTCTAAATGCTTCAACGCCAAATCAAACTCCAAATAAACTTCCCGGTGAACCACCAGCAAAAAAACTAAAGGAATCACCAAATGTAGAGCCGATTGAGAAAAATAACGACATATCTGAAATGACAACGCAATCTGGAATTCCAAAAGAAAATTCAATCCGAAAAAAGAATGAATCATTTTTTgataaacttaaagaaagattGTTAACTGAAACTGGGCAAGATGGATTACTTATTTGCAAAAACTGTGGATTTGAAAGTAAGTGTTTATCAGAACATTCAGTTCATGAAAAAACGTGCGTATCACAATCTAATAAAATACTATCTAATGCCTTACACCAGAATTTAGGATCTACACGATGTCAAAACTGTAGACATAGATGTAAATCAAGTGCAGATTTGTTTCTTCACATGAAAACTtgtgttaataaaaatgaagtcgTAATGAGAGATAAAGTATTAGATATACCAAATCAAAGTACAAATCCAATGGTTCCAAAAACTATAGATGCAGAACGCCATCCAATGGAAAATGTTGTCTTTGTGTGGAACAATATAAATCAAagtgcaaataaatttaatactccATTAGATATAAGTATCAATGACGACTCCACCATGCCAGAACACAGAGCTTTCGACCAAGATATTGCAGATGAAAGCGAACATATGAATTTGTCGCCAAGTCAAGCAGCCGGTAAGAAAGTTTTTAAATGTCCCCATTGCATGTTTTGGGCCTCTACTGCATCTCGATTCCATGTACATATTGTAGgacatttaaataagaaaccatTTGAATGTTCGTTGTGCAAATATAAGTCTAATTGGAGATGGGATATAACTaagcatattaaattaaaatcagctAGAGATCCCGAACACGCTGAAGCAAAAGTTCTGATGACAGATGAGACTGGTCGGCGAAATTATAGCAAGTATAACAAGTTCTTAGCTGTGtcagttttaaatgaaaatggaGAAAATGAATTTCATTACATTGATCCAAACGCAGCAGCAGACGCCACAATAGATGAAGAAACGGTTAATGATGTTAATGATAGTGGAAATACTTCTTTTGATATGCCTTTAAATTTGCAAGCGAATTCAAACGAAGTGTATACAGGACctgattatttaaataagccTAAAAAGACATTATGGAAATGCAAGAAGTGTAATTACAGAGATGCGTCAAGAGAGGCTTTGCTGGATCATGTGAGGGAGCATTCAAAGGCGGAAGAAGAGGCCAAGAAGCCTGAGAATATGGCAGACCCCGCGGATTTAGCTTACCGCTGTGGACATTGCAATCAACTTTCTAACTGGAAACACGTAATACAGaGGCACTGCCGTTTGAAACACGAAGGAATAATAAAGGTTATCACCACCGTTAAACCGAAACCTGATTTAGCAGCTCTGGCAGCTAACGACGGACAAACAGACATGTGCACAAAATGTCCATTCAAAACCAACGACAAAAACGCACTTATAGCACACTTACAACAACATCAACCTTCCCCTCAATCCGTATATAAATGTTACCTATGTCCGTTCTTCGTTAAAGAGGAGTTTGAACTTAACCAACATCTGGTTCTGCATGGTATTAACGATCCTGATGATTACGAATTTATAGCTAAAGCTATGGGCAACAAGTCACCATCTCACGAACAAGGTACAACTCACAATACTTTATCAACAAAACGACACAAGTGTAACGAGTGTCCGTACGAAACCAACAGTAAATCTCAATTTATGTACCATGAACAATTCCATAGGATTTCAGCTGATACGCCTTACAAATGCCCTGAATGCAATTACAGTGTCTCCAAAAGGCATTTGCTGAACCAACATTTAAGAGTCCATGGAATAATTCCCAAGAAAAATGAAATGGATGGTGATTCTGAATTTCCTTCAAATTCAAACCAAGTTTACGAAGAGTCTCCAACGAACTTTGATGAAATTCCTTTCGTATGGGTATCAGCGAAGAATGAATTCCACAAAATGTTCAAATGCCGTTattgttcatatgtaaattcacAAAAATGCAAAATTCCTAATCATGAACAAATTCATTGCATTAGTTTTGATGGCGAAGTTACATGTTATAAGTGCTTGGAATGTAAATTCAcgtgtgataataaaataagattagCTGAACACGCCAAATCTCACGGTGAATTGTATGGTCGCATATATTGTCCAGTAGAACTGGATATACCTGATGAGGAACAAATAGCTAAACTTCGAAAAGTCATAGACGAAGAACAATTAAACTCTTTAAATGACTGTTCGAACGGGCCTTCAACGGGAgagataaaagaaacaaaaacattgtatttttgttataaatgtcCCGCTAGATTTTTTGaagaaagtgaaataaaagTACACGAAAAATTCCACgatttaacattttcttttaaatgtaaaagcTGCGAGTTCTCCGTGCCACAAGAAGCTGAACTAAAAGTCCACAACTCAGTTCACTCTGATGAATACAACACTAGAACCAAAATGCTTAAGTTTGTACACAAAATCCATCCAGCGCATAAAGCACCTAGGTTACAATATGTCCACTGTCCAGCCACTTCAGAAATATCTTGGGTTGCTGCAAAACCAgacaaaaagtttgaaaatgaacatcaaaataaaaaaagcggtGACTCGAGAAGTACACCGAAACAATACTTTTGTAAAGAATGTCCCGCGAAATTTTTCAAGAGTTCTGCATTGAGTTATCACATGGGTCTCCACGGAGGAGAGGGCGAACACAAATGCAAGAAATGTAGTTACGCGGTCAAAAATGTTGGTAATTTGGCGAAGCACGAGCTATTACACGAAAATGATGGCAAACCACCTCCTTGTGATTACGAATCTGGAGACGATCCagactataaaaatattcctCTCTCAGGTACCGATTTGTTTCAAAGAAAAACGGAAGCTCAGAAGAGGGTATTAACAGATAAAGATAAATTGGTAAAACCAAATGATCATTTCCCACCTGTTTTGCAAGCTGATCCTCAATTCGGATTCCTAATGCATGGTAATCCAGAATTTATATATCcaacttatttgaaaaatggCCGTCAAAAAGAAAAACGTTATAAGTGCCACAAATGTCCTTCTGCATTTGAAAAGAGAgaacaatataaaatacatttatcacTACATGGATCTAAGCAAAGATATAAATGTGAACTCTGTGATTATTCTGTAAAGTACTATGCTAATTATGTGCAACATATGAGGAAACATCAAATGAATGATGAAGCTCAAGCAGAAAGGAAGAAAATAAATGGTTGCCCGGAATCAGAAGGTGAAAGCAGGGAGAACAAAGATGATAACAATGATAACATTAAATTAGCTATTAAAAGTATGCCAAAGAGACCACCGCGTAGTGATTTCCAACAATTTTCAATAAGTGATCAACAAACACTACGTCTATTACAACGTAGACGGTCTATTGAATCTATGAAAGAGAATAACGCTAATGCTCCCGTCAAAGATCGGAAACATCATGTATGCCTTTTCTGTCCTTACACCAATCAAAGACTAGATGCAGTGACGAATCATATCAGAAGACACAACAAAAGAGAATTAGCATTATTAAGTGGAAatcaaaaatgttctttttgtaatttagttGTAGTTCAAACACATTTCTTGCGCGAGCATTTAAAAACTCACTTTGCTTACCAGAAAAATTTTACACCTGATTGTTTTGTAGCAAatgaaaatattagttttagtaTATCTAAAGTAGAAGATAGCGAAGAATCTATTGATATCAAATTAGATACgtcaacaaataataaaactgacGATGGTGACAAAATGTACGTCAATATCAGTACTGGGGAAGTTGTGGAATAG
- Protein Sequence
- MLQQMSSPPSAQLGEVATLPRHIEGRLCGDASSEASSDAAEDLELPECKIKRNYSCTKCAFYTQNPRAFLVHSRDVHFEKIRIYDCPHCIYASRHQQKLTRHVKMVHESSSRDEQARVLPETNEPIERIEDLLEEVEECEDMDIDDGNEDHDRLDGEGLVDVTSNLAKNKNNFYSCNKCHYVTHIRTRYTKHVKYHSMPMIKCTMCDFRTPYKWNLDRHMKNHGGTGSFHCSMCNFTADIRQSLTVHEMNHHTPPVGQSVVRRRNRVGASDMSGAVEPVDENSLIIKEEEGSGDSRSSLCASDMGLQYTQTDREMSNCHSDSNEATTSDAINKNEANSLKQSPGHSPNSISDDKKQRKIPRPIPQLIPLNASTPNQTPNKLPGEPPAKKLKESPNVEPIEKNNDISEMTTQSGIPKENSIRKKNESFFDKLKERLLTETGQDGLLICKNCGFESKCLSEHSVHEKTCVSQSNKILSNALHQNLGSTRCQNCRHRCKSSADLFLHMKTCVNKNEVVMRDKVLDIPNQSTNPMVPKTIDAERHPMENVVFVWNNINQSANKFNTPLDISINDDSTMPEHRAFDQDIADESEHMNLSPSQAAGKKVFKCPHCMFWASTASRFHVHIVGHLNKKPFECSLCKYKSNWRWDITKHIKLKSARDPEHAEAKVLMTDETGRRNYSKYNKFLAVSVLNENGENEFHYIDPNAAADATIDEETVNDVNDSGNTSFDMPLNLQANSNEVYTGPDYLNKPKKTLWKCKKCNYRDASREALLDHVREHSKAEEEAKKPENMADPADLAYRCGHCNQLSNWKHVIQRHCRLKHEGIIKVITTVKPKPDLAALAANDGQTDMCTKCPFKTNDKNALIAHLQQHQPSPQSVYKCYLCPFFVKEEFELNQHLVLHGINDPDDYEFIAKAMGNKSPSHEQGTTHNTLSTKRHKCNECPYETNSKSQFMYHEQFHRISADTPYKCPECNYSVSKRHLLNQHLRVHGIIPKKNEMDGDSEFPSNSNQVYEESPTNFDEIPFVWVSAKNEFHKMFKCRYCSYVNSQKCKIPNHEQIHCISFDGEVTCYKCLECKFTCDNKIRLAEHAKSHGELYGRIYCPVELDIPDEEQIAKLRKVIDEEQLNSLNDCSNGPSTGEIKETKTLYFCYKCPARFFEESEIKVHEKFHDLTFSFKCKSCEFSVPQEAELKVHNSVHSDEYNTRTKMLKFVHKIHPAHKAPRLQYVHCPATSEISWVAAKPDKKFENEHQNKKSGDSRSTPKQYFCKECPAKFFKSSALSYHMGLHGGEGEHKCKKCSYAVKNVGNLAKHELLHENDGKPPPCDYESGDDPDYKNIPLSGTDLFQRKTEAQKRVLTDKDKLVKPNDHFPPVLQADPQFGFLMHGNPEFIYPTYLKNGRQKEKRYKCHKCPSAFEKREQYKIHLSLHGSKQRYKCELCDYSVKYYANYVQHMRKHQMNDEAQAERKKINGCPESEGESRENKDDNNDNIKLAIKSMPKRPPRSDFQQFSISDQQTLRLLQRRRSIESMKENNANAPVKDRKHHVCLFCPYTNQRLDAVTNHIRRHNKRELALLSGNQKCSFCNLVVVQTHFLREHLKTHFAYQKNFTPDCFVANENISFSISKVEDSEESIDIKLDTSTNNKTDDGDKMYVNISTGEVVE
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -