Cnem018242.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Calephelis nemesis
Gene Symbol
ci
Assembly
GCA_002245505.1
Location
NJDD01001456.1:60304-86780[-]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 5 0.00046 0.039 15.0 0.4 3 23 365 388 363 388 0.95
2 5 0.19 16 6.8 0.1 3 23 398 423 396 423 0.79
3 5 0.025 2.1 9.6 5.0 1 23 429 453 429 453 0.97
4 5 0.0017 0.15 13.2 0.2 1 23 459 484 459 484 0.97
5 5 9.7e-06 0.00081 20.3 0.3 1 23 490 515 490 515 0.97

Sequence Information

Coding Sequence
ATGCTTCTCATCTTTACGACTTTTCTATTACTGAAAACCCTTAAGATGAAACGGATGATACAGCTGGGGCTATTGATTGCTACAGCAGaagGGTTAGAATATTTAAGTGCAGCAAGAAGTTTACATCCGGAACTTCATGCGGGCAGTACTCTAGCAAGTCAAGATTTTCAACTTAGTTTAGAAGGTTCAAGAATAGCTTCTCCGAACCGATTAAGGTTATCAGGGGGAGCAATAGGAGCATCTGCGAATAGGAAACGCGCGGTATCATGGAGTCCATATTCAGCTGAGTCCTTGGACTTAGCTGCTGTGATCAGAGCGTCTCCGGCTAGTTTGGCTGTAAGAGCACCTTCTGCAGCATCTACTGGGAGCTATGGACATCTTAGtgcagGAGCGATTTCCCCAGCGTTATCACTCTCGCATGCGTCTCTTGCACAACAGCTATTGGCCAGAGGGAGTGTCGTGGGAGGCAGTGGGGTGCTACCAGGTGGAGTGCTACTGGACCCTGCCCATCAGCAGGCAGCGGCAGCGGCGGCGCATCACGCGGCGCACGCGCATTTGGTAGCCGGAATCCACAGaTCGCACATATCGTCACCAACTCAACTTCTGATAGGGGCTCCGGTGGACGTCAGACCCGGTCTGGGTTTAGATGGTACTCCGCCCCAACATATGCAGCAACCACCTCAGCAACCGGAAGTCACTAGTATAATGGAAGCTGATAGTGCGTCAACAGCTTTAAATCAACGTAAATCACCACAAAGTCTTATGTCACATAGAGAGAACATGCACAGCAATAAGCCTTTATCTGCAGCAGCAGAAAGCACAGTCCATGATGGCTTAGACTCAAAGGATGAGCCAGGGGATTTTATTGAAACTAATTGTCATTGGACGTTAGTGATAGCAGAAgtcgtatatttatttaattattctaatttcaGTGCGTCAACAGCTTTAAATCAACGTAAATCACCACAAAGCCTTATGTCACATAGAGAGAACATGCACAGCAATAAGCCTTTGTCTGCTGCAGCAGAAAGCACAGTCCATGATGGCTTAGACTCAAAGGATGAGCCAGGGGATTTTATTGAAACTAATTGTCATTGGgtGGACTGCAAACTCGAATTCCCAACTCAGGACGACTTAGTAAAGCACATTAATACAGATCATATTCACGCTAGCAAGAAAGCATTTGTCTGTCGATGGGTCGGGTGTTCGAGAGACGAAAAACCTTTCAAAGCGCAGTACATGTTGGTGGTTCACATGCGAAGGCACACTGGTGAAAAACCTCATAAATGTACATTCGAAGGTTGTTGCAAAGCATATTCTCGCCTTGAAAACCTGAAAACCCATCTCCGTAGTCACACAGGCGAGAAACCTTATACATGTGAATACCCTGGATGTGCAAAGGCGTTTTCTAATGCAAGTGACAGAGCTAAACATCAGAACAGAACACATAGCAATGAGAAACCGTACGTGTGCAAAGCTCCAGGATGTACCAAAAGGTATACGGATCCGTCATCGTTACGAAAACATGTCAAAACTGTCCATGGTTGTGGTCGAGGCGACGATTCTGCGGAATCTGGTGGCGGGGGTGCAGGTTCGTCTCCGCGCTCGGAGGAGGGAGGAGTTCCGATTGGAGTGCGAGGGCATACCTCATCTGCATCCGTCAAGAGCGAAAGCCCTGCTTCACCGCTACCCCATGCTCTTCATACTCCTGCGCATCAGctATCGGCTCAATGTGGTGGAGATTTAGACTTTGGATCTGTTGGGATTGGAGGTTTTAGTGATGAAAATGGAGCTCCATACTTCAGGATAGAAGGAGAgATTGAACAAGAAGTAGTAGGTGAAGTTGGTCAACTTCCACTGATGCTTCGTGCAATGGTAGCCATCGGGGAACCCAGAGCTCACCACCACACGCCAAGGTTCGGGAATAAGATGGGGGTTGGGAGATTGATGCCGCCCGTCCACGCTCCTGATATTGGTGCTGGTGGAGTAGCTGGTAGAACAGATATTGGTAACACAAATGTAACTATGGAACTGAAGACGGGCCTACCCAATACAAGGCGGGACTCCGGTATTTCCTCTGGCAGTAGCCTGTACAGTGCTAGGTCATCAGATATATCCAGAAAGAGCAGCCAAGCGTCAGTAATATCTGGTGCGGCGACGACGATCACAGGCATCGCCGGGCCGCAGCGGCTAGTCTCACAGCACGCCACAGTGTACGACCAATTATCTCCTGATAGCAGTCGCAGATCTAGTCAAGTATCGTGTGTGGGATATGCTCCACCTCCATCCTCAGCTCTGGCTGCAGTTCAAGCTGTTAGGACATCTCAAGGCAATCAGGCTGTCCTCCTCAAAGGAGTTACGTGTTCAGAAGTTAGAGCTGAAGAATTAGCTTTAGAATTGGACCCTAATGTGCAAGTTAAAGAAGAAGCTAGAAGATTATCAGAACAATCAAATTTGAGTGATCAGGCCCAAAGTTATCAACCATATCCTTGTGCGACAGATGATgttGGTGATGCGTCATTCCCATTCAAGACTGAAGATGATCATGAAGTACACTATAAAGAATCTCGGTCAAACTCTACCAATACGGTTGTGATCACTACTGCCCAAGTACATCATCCAAATCAAGAAGTTAATTTAGAACAGGTAGCGGAAGGAGAAATGGTGGAAAACAAGCTGGTGATACCAGACGAAATGATGCAATATCTTAACCAATCAATATTGGGAACCGACTCGGTAGCACCAGCTAATACTGACACCAATCCACTACCCGAAGTAATCAAGAAAGATGAAAAAAACCCAACCAAAGACGATTTAACTAGTGGCGCACAAGATTCAAACAATCCTAGTGATAAGATCAGTGATGTAGCTACTAGTGACGATTCTCTTCTTAAAAATCTCGGTGCCATAGGAAGTGATCTCAACATAAGTGATATTCAAGTCGATTTAAGGTCATTAGATGTTAGTATGTCAGGTAATAGTGGTTCTTTATTAGCTGCTAAATCACCGGACGATAAGAACCCTTCTCTTCAAGATCAGATAATTCCAGAAGTGCCTTTAGAAAAACCTGAGCAAGACTTTACAAAACCGCCAGTTAGTGAGACAGGGAATAATCCATGGCAATCAATGCAACCCATTCCGTCTAATCAGCAAGAACAAATTAGCAGAGTAAGAATAAATGCTCAACTACCTCAGAAGCCTGCCTTAAGTCCAAAAACTGTTATGAGCCCTCAGGCTGTAATGAGTCCCAACAGGGCTCATAACATGTTAAATAACCAAAATTTACCTCATAGTTCTATGAGTCCCCAAAGTGTCAGAAGTCCTCAAACCATGCCACATAATGTTATGAGTCCACCAAGTGCATATAACATAATGAGCCCACAGAGCGTTATGAGTGTGATGTCTCCACAACATAATGCAATGAGTCCACAAAGCATGCAAAGTATTATGAGTCCTCAGATGACAAATCAAATGATGATGAGTCCACAACATAACAATATGGGTAGCCCTATGTCTCAAAATATTGCAAGTCCAATGGTAAATATCGCCAGTCCTATGAATCAAAATATAGCTAGTCCTATGAGTCACGGGATGCCAAGTCCTATGAGTCATGGTATGCCAAGTCCTATGCATCCTGGAATACAAAGTCCCATCACAAGTCCAATGGTACAGAATATGTACAACATGTCTATGAATGGAATTCCGAtgttaaatcaaaatcaaaacatgatggcaaatatgaatacaaatatGAACTTAAATGCGCAGGCTCAGATGGCACCTACGATCCCATATAATAATCGCCAAATGTGCAATGCTAAAATGCAAAATAGAAATTACAATAATGTTCCTAATCAATACCAAAATAACGTCCCTCCGCCTTCATATCCAGTTCAAAATCAAATGAATATAAGACCTCAAAACATGCAACAATATCCAATGATGCAAAATTACCAAAATCAAATGCAAGGAATGCCAGCTGGATCTCAAAATCAAAACATGATTTATAACAACCACATGATGAATTATCCTCAAAATCAAGCTGTAAACTACTCAAATCAGACACAAAACCAGATGCATCCCATGCAAATGTCTAGATCATCTGTAATGGGACCCCCTCCACCTAAAAACAACCATCAGTATAACCAAACAATGATTAATAGCAACCAATATTACAACCAGCAAAGGCCTTACAACCAGTGGGATTATCCTGGTAATcaatttaataagcataatgTGCAAAAGTCACAGAATACAGTAAACATGTCTACAGATAGCCAGCCTCAAGCTAGCGAGGTTCAAGTATGGGACATTTCACAGTCCCAAATTGAAGCAACGAATGGTAGGAAGAAAAACCAAAACAATATGCGACAGGAGACTTATCAAAGGACGCTGGAGTATgtagaaaattgtgaaaattggAAGAGCTCTGAAATGGTCTCAAGCACAACTCATCCTCTGCAAGGAGGAGATAACATGGTTGTAAATGATCTGCAAACTTCTCTATCTTCATTTTACGAAGAAAATCAATATTTGCAAATGATACAATAG
Protein Sequence
MLLIFTTFLLLKTLKMKRMIQLGLLIATAEGLEYLSAARSLHPELHAGSTLASQDFQLSLEGSRIASPNRLRLSGGAIGASANRKRAVSWSPYSAESLDLAAVIRASPASLAVRAPSAASTGSYGHLSAGAISPALSLSHASLAQQLLARGSVVGGSGVLPGGVLLDPAHQQAAAAAAHHAAHAHLVAGIHRSHISSPTQLLIGAPVDVRPGLGLDGTPPQHMQQPPQQPEVTSIMEADSASTALNQRKSPQSLMSHRENMHSNKPLSAAAESTVHDGLDSKDEPGDFIETNCHWTLVIAEVVYLFNYSNFSASTALNQRKSPQSLMSHRENMHSNKPLSAAAESTVHDGLDSKDEPGDFIETNCHWVDCKLEFPTQDDLVKHINTDHIHASKKAFVCRWVGCSRDEKPFKAQYMLVVHMRRHTGEKPHKCTFEGCCKAYSRLENLKTHLRSHTGEKPYTCEYPGCAKAFSNASDRAKHQNRTHSNEKPYVCKAPGCTKRYTDPSSLRKHVKTVHGCGRGDDSAESGGGGAGSSPRSEEGGVPIGVRGHTSSASVKSESPASPLPHALHTPAHQLSAQCGGDLDFGSVGIGGFSDENGAPYFRIEGEIEQEVVGEVGQLPLMLRAMVAIGEPRAHHHTPRFGNKMGVGRLMPPVHAPDIGAGGVAGRTDIGNTNVTMELKTGLPNTRRDSGISSGSSLYSARSSDISRKSSQASVISGAATTITGIAGPQRLVSQHATVYDQLSPDSSRRSSQVSCVGYAPPPSSALAAVQAVRTSQGNQAVLLKGVTCSEVRAEELALELDPNVQVKEEARRLSEQSNLSDQAQSYQPYPCATDDVGDASFPFKTEDDHEVHYKESRSNSTNTVVITTAQVHHPNQEVNLEQVAEGEMVENKLVIPDEMMQYLNQSILGTDSVAPANTDTNPLPEVIKKDEKNPTKDDLTSGAQDSNNPSDKISDVATSDDSLLKNLGAIGSDLNISDIQVDLRSLDVSMSGNSGSLLAAKSPDDKNPSLQDQIIPEVPLEKPEQDFTKPPVSETGNNPWQSMQPIPSNQQEQISRVRINAQLPQKPALSPKTVMSPQAVMSPNRAHNMLNNQNLPHSSMSPQSVRSPQTMPHNVMSPPSAYNIMSPQSVMSVMSPQHNAMSPQSMQSIMSPQMTNQMMMSPQHNNMGSPMSQNIASPMVNIASPMNQNIASPMSHGMPSPMSHGMPSPMHPGIQSPITSPMVQNMYNMSMNGIPMLNQNQNMMANMNTNMNLNAQAQMAPTIPYNNRQMCNAKMQNRNYNNVPNQYQNNVPPPSYPVQNQMNIRPQNMQQYPMMQNYQNQMQGMPAGSQNQNMIYNNHMMNYPQNQAVNYSNQTQNQMHPMQMSRSSVMGPPPPKNNHQYNQTMINSNQYYNQQRPYNQWDYPGNQFNKHNVQKSQNTVNMSTDSQPQASEVQVWDISQSQIEATNGRKKNQNNMRQETYQRTLEYVENCENWKSSEMVSSTTHPLQGGDNMVVNDLQTSLSSFYEENQYLQMIQ

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
iTF_00145099;
90% Identity
-
80% Identity
-