Cnem003695.1
Basic Information
- Insect
- Calephelis nemesis
- Gene Symbol
- -
- Assembly
- GCA_002245505.1
- Location
- NJDD01001328.1:1-16874[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 10 0.19 16 6.8 0.4 1 23 155 177 155 177 0.95 2 10 0.011 0.93 10.7 1.1 2 23 179 200 178 200 0.94 3 10 0.02 1.6 9.9 3.4 2 23 208 230 208 230 0.94 4 10 0.025 2.1 9.6 2.5 2 19 239 256 238 261 0.93 5 10 0.93 78 4.6 1.0 1 11 266 276 266 283 0.82 6 10 0.085 7.2 7.9 0.7 3 19 290 306 288 309 0.90 7 10 2.2e-05 0.0018 19.2 2.6 3 21 319 337 318 339 0.95 8 10 5.1e-05 0.0042 18.1 0.5 1 23 345 367 345 367 0.99 9 10 0.00021 0.018 16.1 0.6 3 23 375 395 374 395 0.97 10 10 1.1e-07 9.1e-06 26.5 3.1 1 23 401 423 401 423 0.99
Sequence Information
- Coding Sequence
- atgcttatgtgCCGAGCCTGTCTCGCTGAACCAGGAGCAGACAAAATGACCCTTTTTGATGAGCGCTccgttttcaattttatcttattgacaaatttaaatgTCATGCTATTTGATAAGCTGCCCCAACAATTGTGTGAAAGTTgctataaaaacttaaattcttACATAAAATTCAGAGAACAATGTATAGAATCAAACtcttacttacaaaatttagttaatgaaccgGAGgctaaaattgatataaaagaagaaaaaattaatttggaaccagatttagataatataaaaatagagttTATTTATGAAGATTCTATACATGATGATGtagaatttgaaaatgatgAAAATGTTACTACTGTCAAAAATGAGCGTATTGAAGatataactCTAAAGAAGTCTCGTTCAATCAAAACCAGGAAAAAGCAAAAAACAAAACCAGAAAAACAAGAATTGTTACATGACTGTGggCTTTGtgaagaaaaattacaaaatatagatCTATTGTCGCAGCACTTACTGACCCACAAACGATGCACGTTTTGTCCGACAAAGTTTTCTGACACGCCATCATTGGTTATACATAGATTTCAACATATTTTGTCGGTCAAGAATCCATACTgccatttatgtaaaaaaaagcttGGAAATAAGGGAACATTAATAagacattattttaaatcacattACAGAAATGAGaaaatcaCAATCGAATGTTCAGAATGTTctcgtatttttaaaacaatgaaaaaactaaataatcatAAGTGGTCGTGTCATTCAAATAGAAACTACGTATGTGATCATTGTAGCAAAgtgACTAGGgGGCATTACATTCGGAAGCACAATCCGAACAGAGTATATTGTGATTGCTGCGGAagagtgtttataaataaagaaaggtTACAGGAACACAGTACTAAATGTAAGACTTCCAAAAATCCAAATATTTGTGATGTTTGTGGCAAGATATTCTCCAGGTCAAATAAACTAAGTCGTCACATGCGCTGCCATGACGACAGTAAGAAGTTCAAGTGTGACCGATGTCCCGCCGAGTACAAGAACAAGAGCGGGCTTATTGAACACCAGAACAAACACGACGGGATTCGGAACAGGCATTGCGAATATTGTGGCGCCTCTTTTTACGCGCAATCTGTCCTTATTAAACATCGTCGTATACATACAGgaGAAAAACCATATACTTGTAAAATTTGTCACAAAAGTTTCACTGGCAATAATAACCTGAAGGTACATATGAAAGTGCATGGCGAATACTTGGTCAAGAAAAAG
- Protein Sequence
- MLMCRACLAEPGADKMTLFDERSVFNFILLTNLNVMLFDKLPQQLCESCYKNLNSYIKFREQCIESNSYLQNLVNEPEAKIDIKEEKINLEPDLDNIKIEFIYEDSIHDDVEFENDENVTTVKNERIEDITLKKSRSIKTRKKQKTKPEKQELLHDCGLCEEKLQNIDLLSQHLLTHKRCTFCPTKFSDTPSLVIHRFQHILSVKNPYCHLCKKKLGNKGTLIRHYFKSHYRNEKITIECSECSRIFKTMKKLNNHKWSCHSNRNYVCDHCSKVTRGHYIRKHNPNRVYCDCCGRVFINKERLQEHSTKCKTSKNPNICDVCGKIFSRSNKLSRHMRCHDDSKKFKCDRCPAEYKNKSGLIEHQNKHDGIRNRHCEYCGASFYAQSVLIKHRRIHTGEKPYTCKICHKSFTGNNNLKVHMKVHGEYLVKKK
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -