Cnem017005.1
Basic Information
- Insect
- Calephelis nemesis
- Gene Symbol
- -
- Assembly
- GCA_002245505.1
- Location
- NJDD01004235.1:40650-46795[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 10 3.5 3e+02 2.8 2.0 1 21 537 557 537 560 0.88 2 10 0.091 7.6 7.8 0.0 2 23 586 608 585 608 0.94 3 10 0.073 6.1 8.1 0.8 2 23 632 653 631 653 0.97 4 10 0.01 0.88 10.8 1.7 1 21 657 677 657 679 0.95 5 10 0.002 0.17 13.0 1.8 1 23 684 707 684 707 0.95 6 10 0.0042 0.35 12.0 1.2 2 23 715 737 715 737 0.92 7 10 0.00045 0.038 15.1 1.2 3 23 746 767 745 767 0.95 8 10 5.8e-06 0.00048 21.0 2.2 1 23 773 795 773 795 0.97 9 10 8.4e-05 0.007 17.4 1.4 1 23 801 823 801 823 0.99 10 10 4.5e-05 0.0038 18.2 3.1 1 23 829 852 829 852 0.97
Sequence Information
- Coding Sequence
- atggggaataatttgaaattattacaGCAAAATGACATTGTAATAGATGAGAAATCCTGTGAATCTGAAAATGGGTGGAAAATGGTAAACCGAAAAAAACCGAAGTTGGTTTCCAGATTAGTCCAAAAAGGAGGAAATTCGCAGATTTCTTCTTTTCAAGCCATACAGAGGAAGAGATTTCTACACGTGTGGTCTCTGCACCCAGATACATCGGAGGAGGCAATATTTAAACACGTTAAGTCCATTTGTAACTCCGAGGATATCAAAGTAGACAAAATTATCCCTAAAACAAAAAGGAACTACTCATCTTTTATAGTAGGAGTGCCAGAGTCCTTGTTTGATATGGTGAATAATGCAAATAGTTGGCCGGTAAATGCTCAATTTAAAGACTGGGTGTGGTTTCGCAACTCCCGGAAACCCTCAAAAGCATCAGAAGGCCACTCGATAAGTGATGGAGAACTTATACCACCAGGATATAAGATTTTGCGGTGTGATCGGGCAGACGGTCGGAAGCAAGGAGGAGTTTTCTTAGCGGCGTCATTGCAAGTGGAAATTAATCAAGTTCTAATTGAGAATGTAGACGCggctttatttgaaataatttgtgCGACGAATGTATTAGTGGTGGGTAATTTTAATATGCCTTCGGCGACAGTAGAACTGCAGaactatttgaaatattttattgcgtTCTGTGGATCTCGGCAGATAAAtgatatatgtaatattaacaATCGTACTCTAGACTTAGTGATGACGACGTTATTGGAGGATGATATTGAAGTCCATATGTCGGATGAACCATTGGCAGGCATAAACGTTCACCATCCTCCATTAgcgattaaaattaattcatttcgGAACGCCGCCATCGGACAAATACCGAGTATTCgcagtaaaacttatttaaaaaaggacgGGAAGGTAATTAGTGATGTTGAGTGCGCAGAATATTTTGCCTCATACTTTCATTCTATATACAGCAATGAGCGGCCAGTCTTGGACCCGATAGCAGCGGAGAGATCGGCAGCGACAAGGGCGAGCGCAGCTCGTGTGCATATAGGTCAGTTCAGCGATAGAGACCTGCGTTCGACGCTTGACCGCCTTAAACCCAAGCATTCCGTGGGCCCGGACTGTATACCACCGTATATTGTAAAAGATTGCCGTGAAGTGTTTTTGAAACCTTTATTACAcgtttttaatctatttttgaaTGAAGGGCGCTACCCGGATCGTTGGAAAGTTACCAGAGTCATACCGGTCCCGAAAGGTCGTTCAAGCTCTGACGTTAGTGGCTATAGGCCAGTAGCAGTCCTATCGGCGTTTGCCAAGGTGTTTGAATCAGCGCTACACGGATGTATTTATTCCCAAATTGATTCTCAACTGAATGATGCTCAGCACGGCTTTCGGCCAGGTCGAAGTATGGAAGTCAAAGTCACAGTTAATCAACGCGCTGCTCCAAGTGAACTTGTAAGAAagttaaaaatcaatttaatcaacaaaataaatttagacaatGCTcaagatattaataaacatagacgcAATTTGAAAGAAATCCTAGAAAACAGCAATGCTACTTTGGTTCGTGATTATGGAGATACTGGTTATGCGTGTTATTTTTGCTCAGATCACTACAAACTTCCTTCTGAATTAAAAAAGCATAACTTAGATCAGCATTGTGTTGTAGTTAACGAAAAACAATTGTGTGGAGAACTACATTCGCTTTGTATTAAATTGGATATTACTGACCTTATATGTAAGATCTGTAAAGAAGGTATTAGTTCAATAGAAAATTTGATTGAACATTTGTATAAGATTCACTCTCGAAAAATTATTCTCGGATTACAGTCACATATATTACCCCTAAAATTCAAAAGTGATAATACACTACAGTGTTGCATATGCCagaatgattttataaaattacaaccttTGTTGATTCATATGAATACCCATTTTAGAAATTATATCTGCAACATATGTGAGTCAGGATTTATTAACAAAAGGAGATTGAATGTTCATATGAGGTGTCATAAAATGGGTACTTACAAATGTGATATTTGTTCAAAAGTGTTTAATACTTTAACTAAAAAACGCAATCACGAGAAACAAGTTCACGAAAAATCAATGTTTGTGGCGAGATGTGGATATTGCAAAGAAGTATTCAAAAGTAAAGTGCAAAAGCAAAAGCATTTGACAGAAGAACATGGTGTTGCTACTGTTCCAAGACATTGTAGAGCTTGTGATAAGGTTTTCTCTAGTACAGGTTCTTTGTTGGTCCACATGAAACGGGCTCATATGGTACAAAGACCTCATGAGTGTCAAGAGTGtgacaaatcttttttttcacGCTCAGAATTAAAAGGACATATGATCAAGCACACTGGGAAACGAGAGTTTAAGTGCGAAGTTTGTCAAAAGCTGTACAAGAAAAAGTGGACTCTAAGCGAACATATGCGAATACATGCAAACGACAGGCGATTTAAATGCGAACATTGTGGGCAAGCATTTGTCCAGAAATGCAGTTTGCTAGGACACATGCGAGCTAAACATGGAGAACattgtttgaattaa
- Protein Sequence
- MGNNLKLLQQNDIVIDEKSCESENGWKMVNRKKPKLVSRLVQKGGNSQISSFQAIQRKRFLHVWSLHPDTSEEAIFKHVKSICNSEDIKVDKIIPKTKRNYSSFIVGVPESLFDMVNNANSWPVNAQFKDWVWFRNSRKPSKASEGHSISDGELIPPGYKILRCDRADGRKQGGVFLAASLQVEINQVLIENVDAALFEIICATNVLVVGNFNMPSATVELQNYLKYFIAFCGSRQINDICNINNRTLDLVMTTLLEDDIEVHMSDEPLAGINVHHPPLAIKINSFRNAAIGQIPSIRSKTYLKKDGKVISDVECAEYFASYFHSIYSNERPVLDPIAAERSAATRASAARVHIGQFSDRDLRSTLDRLKPKHSVGPDCIPPYIVKDCREVFLKPLLHVFNLFLNEGRYPDRWKVTRVIPVPKGRSSSDVSGYRPVAVLSAFAKVFESALHGCIYSQIDSQLNDAQHGFRPGRSMEVKVTVNQRAAPSELVRKLKINLINKINLDNAQDINKHRRNLKEILENSNATLVRDYGDTGYACYFCSDHYKLPSELKKHNLDQHCVVVNEKQLCGELHSLCIKLDITDLICKICKEGISSIENLIEHLYKIHSRKIILGLQSHILPLKFKSDNTLQCCICQNDFIKLQPLLIHMNTHFRNYICNICESGFINKRRLNVHMRCHKMGTYKCDICSKVFNTLTKKRNHEKQVHEKSMFVARCGYCKEVFKSKVQKQKHLTEEHGVATVPRHCRACDKVFSSTGSLLVHMKRAHMVQRPHECQECDKSFFSRSELKGHMIKHTGKREFKCEVCQKLYKKKWTLSEHMRIHANDRRFKCEHCGQAFVQKCSLLGHMRAKHGEHCLN
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -