Basic Information

Insect: Calephelis nemesis
Gene Symbol: PRDM5
Assembly: GCA_002245505.1
Location: NJDD01003395.1:27587-42506[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 10 0.31 26 6.1 0.3 1 20 249 268 249 272 0.89

2 10 1.4 1.1e+02 4.1 0.6 1 23 304 326 304 326 0.93

3 10 0.0033 0.27 12.4 1.7 1 23 377 400 377 400 0.96

4 10 5.4e-05 0.0045 18.0 2.8 2 23 405 426 404 426 0.97

5 10 0.017 1.4 10.1 1.1 2 23 434 454 434 454 0.97

6 10 3.3e-05 0.0028 18.6 2.2 1 21 460 480 460 485 0.94

7 10 0.0015 0.13 13.4 0.4 1 23 493 516 493 516 0.94

8 10 0.63 53 5.2 0.4 1 19 522 540 522 543 0.78

9 10 1.8e-05 0.0015 19.5 0.5 1 23 550 572 550 572 0.94

10 10 3.2e-05 0.0027 18.7 1.5 2 23 579 601 578 601 0.96

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	10	0.31	26	6.1	0.3	1	20	249	268	249	272	0.89
2	10	1.4	1.1e+02	4.1	0.6	1	23	304	326	304	326	0.93
3	10	0.0033	0.27	12.4	1.7	1	23	377	400	377	400	0.96
4	10	5.4e-05	0.0045	18.0	2.8	2	23	405	426	404	426	0.97
5	10	0.017	1.4	10.1	1.1	2	23	434	454	434	454	0.97
6	10	3.3e-05	0.0028	18.6	2.2	1	21	460	480	460	485	0.94
7	10	0.0015	0.13	13.4	0.4	1	23	493	516	493	516	0.94
8	10	0.63	53	5.2	0.4	1	19	522	540	522	543	0.78
9	10	1.8e-05	0.0015	19.5	0.5	1	23	550	572	550	572	0.94
10	10	3.2e-05	0.0027	18.7	1.5	2	23	579	601	578	601	0.96

Sequence Information

Coding Sequence: aTGGAACAAGACGTGGATAATAGAATTCGACCAATGTGTTGTGCGTGTCTTAGTTCTGACCGTAATTTAATCTCAGTATCAAGTGTTCTGGAGATAGCACAAATTTTCGAATTAATTATGTACGATTTCGCGGTTGACAGAATAATACACCCCAATAGTGACTTGAAACAACTAATATGCTGGGAATGTTTAGCTTTTATGAAGAAATTTGCCAAGTTCAAGAGGCAGGTTCACAGTGCCCAAGAACATCTTAGAATTTTATCCCTAGGACACTCACTAGAGagtGTGGACCACACATACCTATCCCATTCACTATCTTCATTGGAGTGTGTAATGAAAACAAGCTATGATCAAACTTATTACTATGATGATAATGTCACTGATGATCCAGAACAGTTTTTAACTATTGCGACCGTCATGAAACCACCAGAGTTTGATGTTGCACAAGCGTTGAGAGAAAATATCACACTTGTGCCAGAGATAGTAGTACAGAACCCGGTAACTGGTATGATGTCTCACATTATGGTCAGTGATAGTATGCTTGGCGAAACCTATCTCACAGAaccCAACGCAATATCTCACACAGTGATCATCAACCAGACTCCTAAACAAGAGCCAGAGCCGCAAATGACTAAAGATCAAATCAAACTAAAAAGTGGTTACACTGTAGAGTATATGACAGAAGAAGACATGCAGGCTTGGAGagAGGAATCAAAAAAGAAAGTCCAATACATGAGTTCGGTGTACAAGTGCGAACTGTGTGTGATGTCGTTCTTCACAGAGCAGCAGGTGGAGGAACACTTCGTAGCCAGCCATCGGATGaaagcCGGTCATGAAGCATGCAAAGTGTGCTACGTATATGTGGAGCAGTCCAAGCTGGCCAACCACGTTGAGGCCCACTACCTCCGCTACGTGTGCAAGATATGTTCCCATCAGGAGACCAGCGCCAAGTTAATAACCGCCCACGTACAGAGTCACCTGAGCAGGCCCGTACCCAGCACTGTCATACAGATCGGCGACGCCACTGCTACGAGGAAAGGTcgaaagaaaaggaaaaaagaGATTGAGAAAGGTGAAGTCAAGCCCGGAGATCTGAGGAAGCTACTCAGCAAGACGACTATAACTGGGTACAAGTGCCTAGAGTGTGACatgttttttaaaaATAGCCGCGCGCGGAAAAACCACGTCGCTCGCTTCCATAGGGAAGGTCTGCAGTGTGACCATTGTCAAAAACGTTTTGTGAATAGGACAACACTGGCAACACATCTCAAATTACACGAAGGTCCACTGCCTCGTGGTGAATGTCCCATTTGCCACAAAATGGTACGGTTGGTACAACTGAAGTACCATGTACAGAGACATCAGAGCTCACGACGGTACGAGTGTTCAGACTGCAACAAGAGCTTCTCACATTTAACCACATATCAGGCACATCTGAAATATTCTAGGCCGCATGCTTCGGATCAGGTGTTCAAGTTCCCGTGTCCGATGTGCAATAAGGGGTACCCCACGAAACAAGCTATGCAGGATCACTTCAACTACCAACATCTCGGGAAAACAACACACAAGTGTCCCGTTTGTAGCAAGGCGAATGTAGAAAAACATATGCTCAGGATCCACGGAGAGAAGAAGGAGAAGCCGAGGAACCACGTCTGCCAGCAGTGCGGGAAAGGATTCACAGATAAGAAGGCTCTGACCCAGCACGCGGTGATCCATTCTGGCGACAGACCGCTCACGTGTGACATCTGCCAACAGACGTTCAAGCAGAAGGCGTCTCTCTACACACACAGGAAGCGGGTACACAAGGTCTTCCCCAACAAGAAGGTTGTCGAGTTCATGGATATCAAACCAGaggcttaa
Protein Sequence: MEQDVDNRIRPMCCACLSSDRNLISVSSVLEIAQIFELIMYDFAVDRIIHPNSDLKQLICWECLAFMKKFAKFKRQVHSAQEHLRILSLGHSLESVDHTYLSHSLSSLECVMKTSYDQTYYYDDNVTDDPEQFLTIATVMKPPEFDVAQALRENITLVPEIVVQNPVTGMMSHIMVSDSMLGETYLTEPNAISHTVIINQTPKQEPEPQMTKDQIKLKSGYTVEYMTEEDMQAWREESKKKVQYMSSVYKCELCVMSFFTEQQVEEHFVASHRMKAGHEACKVCYVYVEQSKLANHVEAHYLRYVCKICSHQETSAKLITAHVQSHLSRPVPSTVIQIGDATATRKGRKKRKKEIEKGEVKPGDLRKLLSKTTITGYKCLECDMFFKNSRARKNHVARFHREGLQCDHCQKRFVNRTTLATHLKLHEGPLPRGECPICHKMVRLVQLKYHVQRHQSSRRYECSDCNKSFSHLTTYQAHLKYSRPHASDQVFKFPCPMCNKGYPTKQAMQDHFNYQHLGKTTHKCPVCSKANVEKHMLRIHGEKKEKPRNHVCQQCGKGFTDKKALTQHAVIHSGDRPLTCDICQQTFKQKASLYTHRKRVHKVFPNKKVVEFMDIKPEA

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00257252; iTF_00144972;
90% Identity: iTF_00257252;
80% Identity: -