Cnem018422.1
Basic Information
- Insect
- Calephelis nemesis
- Gene Symbol
- GIP
- Assembly
- GCA_002245505.1
- Location
- NJDD01000088.1:28643-60586[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 15 0.22 19 6.6 2.5 1 23 60 83 60 83 0.93 2 15 0.03 2.5 9.3 0.8 2 23 110 132 109 132 0.96 3 15 0.029 2.4 9.4 0.5 1 23 154 176 154 176 0.98 4 15 0.0014 0.12 13.5 1.4 1 23 180 202 180 202 0.96 5 15 0.26 22 6.4 0.9 1 23 207 230 207 230 0.97 6 15 0.016 1.3 10.2 0.5 2 20 237 255 236 257 0.91 7 15 0.021 1.8 9.8 0.4 3 23 599 620 597 620 0.92 8 15 0.0027 0.22 12.6 0.1 2 23 647 669 646 669 0.95 9 15 0.019 1.6 10.0 3.2 2 23 692 713 691 713 0.97 10 15 0.34 28 6.0 0.3 1 23 717 739 717 739 0.91 11 15 0.2 17 6.8 0.2 1 23 744 767 744 767 0.95 12 15 0.043 3.6 8.9 1.7 2 23 775 797 775 797 0.96 13 15 0.00034 0.029 15.5 0.7 2 23 805 827 804 827 0.96 14 15 0.17 14 7.0 2.0 1 23 833 855 833 855 0.96 15 15 7.6e-05 0.0064 17.5 1.7 1 23 861 884 861 884 0.98
Sequence Information
- Coding Sequence
- CatcaaaaagaagaaaagaaaaaggtgTGTATAACATTGGGACCGAAACCAATACCGAAGATGCAAATGATAAGAAAGAAAAGCAAAGAAagggataaaattaaacattacgaGAACGTTAgagaaatacttttaaattctaATGCAACGCCAATAATTTGTCCAAGCGGTGTTGGATACTCTTGTGGGTTCTGCTCAGTGAAGTACATGgaaccaaaacatttaaaaaaacacactctTGACAAACACGACGTAAGAATCAGATCTCAATTTATGAAAGAATTCCAAATGAATTCATTTGTAGTCAGATTAGATATAACAAATCTGAGATGCACTctatgtgataaaaatattaaagagcTTAAAGATTTAGTAACtcatctacaaaaaaaacatagcaaaatttATCACAGTGATATTCCAGATCATATTATTCCATTTCGATTTGATTGTCatgatttttattgtgttatatgCAAAGAAAACTTTGCtgctttaaaagttttatgcGAGCATATGAATGTTCATTTTGAAAATCACATTTGTGATTTATGTGGTTCtggttttgtaaataaaaggaCATTACAAACTCATCGTGAGAGACATAAAGTTGGTGCTTTTAGATGTGTTAGTTGTAAACAAGTATTTGAAACTAGGTTACAGAAATTAGACCATGAACGAACTGTACAtgttaaagaaaagaaattaaaatgccGTTACTGTGATGAGAAATTTACAGATTATTCGAAGAAGAAAGCTCATGAGTTGATTGTTGGTTATGCAGACTCCGATTGGGGAGGCGATATTGTAGACCGAAAAAGTACAACAGGGCACGTATTCAAAGTGTTCGATAATTGTACAGTGTCGTGGAATTCACGTAAACAAAACAGAGTCGCCGCTTCCTCAACGGAGGCTGAGTACATGGCTCTATATGAGGCCGTAATAGAAGCTATCTGGTTGAAGTCGCTACTAAATAttgCAAGTAGTCATGTACCAAAAGTAGATATTCAAGAGGAACCAACAACTATTGCAGTAGATTGCAAAGAAGAATTCCTTGATCTAGACGATGAAGAGCATTTAGAGGGAGATTTCAACACATCTCATGATGAGGTTGCAAGAAGTCATGAATATGATGATTTGGATATTAAAGAGGAACCAACAATTATTTCAGCAGATTGTAAAGAAGAATACCTTGATGTAGACGACGACGAAGAGTGTTTAGACGAAGATTTCCTCAAGTCTGATGATGAGGgAAAATGGTACTATGgtgttattataattactgAAAAAAACTGTCCATTAGAGAAAATGTCCGACAATGACTCTGAATCATCTTCAGATGAACCACTCGCAAATATTGTATTGGCCAAAAAGTCGAACGATGAAGATCCATTTTATTGTTCAGATGACTCTATTGATGACCCCGACTATAAACccctacaaaaaaaacaacgaagAAAATCACTTTTAGGCGATAAGGATGCAAATAATTATGACACGGATATTGATATTAAAGAGGAACCTTTATCATTAGATTTCGAAGACGAATACCTTCACATAGATGATGACGATGAAGATAACTTAGACGAAGGTTTCAGCATGCCTgataatataggtgcATCGAGTGAAAACACCAAGAATAGGCGTAGACATAAAAACGAAACCAAAGAATGCTCAAAAACTAAACCAAAAGCGAAAATAGACGAGATATTAGAAAAACATAGGACAAATATACGGGAAATAATTCAATGGTCAAATGCAACACCCATCCGCAGAGTTGACATTGGATATGGTTGctgtttttgtgaaataaaattcgTACGTCCTGCTGATTTGAAAAGTCACACTATTGAAGCACATGATaatgatactaaaataaatttcatgaaagGTGTACATTTGTTTCGATATTTTGTTAAGCTTGACATCActtctttaaaatgtaatatttgtggTACTGCTTTTGATTATCTTGAACAAATAATGGATCACTTGAAATATgtgcatgaaaaaaatataaacacagaTATAGATAATCACATAAtgccttttaaatttaatagtgaCACATTAAAATGCTTCATGTGtcataacatttataataatttcaatacTTTGCAAGAACATATGAACACACATTACAGAAATTATATATGTGATGTTTGCGATGCTGGATTTATTAACAGACGCTTTTTGCTATTTCATAGACAACTACATAAAAATGGAACGTTCGTATGCGGCCAATGCTCTGAAGTGTTTGACACATTACTAAAGAAAAAGGTACACGAAAGAATAGTTCATGAGGGCATTGCTCAGCATCGTCAATGTGATCACTGTAATGAGAAATTTAAAGGCTATTGGCAGAAGAATTTGCACATGGCTAAAGTTCACGGAGTTGTTCTCCCTGCAATAGAATGCAAAGCTTGTGATAGAACCTTTTCAACCCAACAACTTCTCTACATTCATACAAAGAAGGATCATTCGATGCAAAGACACCATAAGTGTTCGTTTTGTGAAATGAGTTTCTACTGGAAGAGAGATTTACTAGATCACATTGTTAGGCATACTGGTACGAGAGATTTCAAATGTGAAATGTGTTCTAAATCCTATGGAAGGTTGAAGACTTTAAAGGATCATATAAAGAGACTACATCCAGAAGAAAATGGCTACAAAAGTGTGGTTGCGCCTTGTAAAAAAAGGTAG
- Protein Sequence
- HQKEEKKKVCITLGPKPIPKMQMIRKKSKERDKIKHYENVREILLNSNATPIICPSGVGYSCGFCSVKYMEPKHLKKHTLDKHDVRIRSQFMKEFQMNSFVVRLDITNLRCTLCDKNIKELKDLVTHLQKKHSKIYHSDIPDHIIPFRFDCHDFYCVICKENFAALKVLCEHMNVHFENHICDLCGSGFVNKRTLQTHRERHKVGAFRCVSCKQVFETRLQKLDHERTVHVKEKKLKCRYCDEKFTDYSKKKAHELIVGYADSDWGGDIVDRKSTTGHVFKVFDNCTVSWNSRKQNRVAASSTEAEYMALYEAVIEAIWLKSLLNIASSHVPKVDIQEEPTTIAVDCKEEFLDLDDEEHLEGDFNTSHDEVARSHEYDDLDIKEEPTIISADCKEEYLDVDDDEECLDEDFLKSDDEGKWYYGVIIITEKNCPLEKMSDNDSESSSDEPLANIVLAKKSNDEDPFYCSDDSIDDPDYKPLQKKQRRKSLLGDKDANNYDTDIDIKEEPLSLDFEDEYLHIDDDDEDNLDEGFSMPDNIGASSENTKNRRRHKNETKECSKTKPKAKIDEILEKHRTNIREIIQWSNATPIRRVDIGYGCCFCEIKFVRPADLKSHTIEAHDNDTKINFMKGVHLFRYFVKLDITSLKCNICGTAFDYLEQIMDHLKYVHEKNINTDIDNHIMPFKFNSDTLKCFMCHNIYNNFNTLQEHMNTHYRNYICDVCDAGFINRRFLLFHRQLHKNGTFVCGQCSEVFDTLLKKKVHERIVHEGIAQHRQCDHCNEKFKGYWQKNLHMAKVHGVVLPAIECKACDRTFSTQQLLYIHTKKDHSMQRHHKCSFCEMSFYWKRDLLDHIVRHTGTRDFKCEMCSKSYGRLKTLKDHIKRLHPEENGYKSVVAPCKKR
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -