Basic Information

Insect: Calephelis nemesis
Gene Symbol: -
Assembly: GCA_002245505.1
Location: NJDD01005531.1:17762-29743[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 9 0.0012 0.1 13.7 1.7 1 23 236 258 236 258 0.98

2 9 0.00033 0.028 15.5 0.7 2 23 326 347 325 347 0.96

3 9 0.0012 0.097 13.8 0.7 1 23 351 373 351 373 0.98

4 9 0.0037 0.31 12.2 0.1 1 23 380 403 380 403 0.95

5 9 2.8 2.4e+02 3.1 0.2 3 23 411 432 409 432 0.84

6 9 5.9e-05 0.005 17.8 1.7 1 23 438 461 438 461 0.97

7 9 0.00013 0.011 16.8 1.4 1 23 467 489 467 489 0.98

8 9 2e-06 0.00017 22.5 0.9 1 23 495 517 495 517 0.98

9 9 3.7e-06 0.00031 21.6 2.7 1 23 523 545 523 546 0.96

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	9	0.0012	0.1	13.7	1.7	1	23	236	258	236	258	0.98
2	9	0.00033	0.028	15.5	0.7	2	23	326	347	325	347	0.96
3	9	0.0012	0.097	13.8	0.7	1	23	351	373	351	373	0.98
4	9	0.0037	0.31	12.2	0.1	1	23	380	403	380	403	0.95
5	9	2.8	2.4e+02	3.1	0.2	3	23	411	432	409	432	0.84
6	9	5.9e-05	0.005	17.8	1.7	1	23	438	461	438	461	0.97
7	9	0.00013	0.011	16.8	1.4	1	23	467	489	467	489	0.98
8	9	2e-06	0.00017	22.5	0.9	1	23	495	517	495	517	0.98
9	9	3.7e-06	0.00031	21.6	2.7	1	23	523	545	523	546	0.96

Sequence Information

Coding Sequence: atGGAAAACGTTAAAAGTAAAGGACCTTTAATAGATCCGGCTTTGTGTCGTTGTTGCCGGTCAATTAAGAAATGCCGTCTTCTCACCACGGAATATGAATGGATGGgccaaaaagaaatatattctgAGATCATATTGGATGTTTTTGGTATTTTGcTGTCTAATCTCGACAATAGTAGTAAAGATACATGTATATGTGCGACATGTGTGACCCGTCTCCGAGAAGCGAGAGCTTTTAGGCAGCAAGTGCTACAATCAGAAGAGATGTTTTTGCAAGCCAAAATTGAGAAGAAAGATGTTGATGAAACCCTGAACGTGGAAGTTAAAGCTGAGATATTCATGAATGACATAAGTAATGTGAATGATGACAAAGATTGTGATATGGATACGGAAGACGCAAACGATGACTTTAAACTGGATTCCAGTTTGGATTCTCAAAAAGATGCGAGAGAGAGaatagatattccaaaaaaacatactaaaaagaaaactaaaaagctGAAAAAACGCGAGGATCTCTCAAAgctcaaacataaaataaaactgcggTCTAAATTTGAGAAGCTCTTGGAATCGGCTCCTACTTCTCAGaataaactacttttaaaacGTCCAAAAATCGATCACGACTACATGGCCTATATGAATACAATAGCCATAGTTCAAAATTCATATGTCTGTCCTTTTCATAACCGAATAAGCTTCTACTATTGCTACTACTGCAAAGACCAATTCACAAATCCAACCGAGTTAAGAGATCATACATTGACTCATGACCCGAAGCAACTCTTTGAAAATTCAATGGAAAATAAGAAGATTCCGAAAATAGATATCACGAGAATTGATTGTCGACTTTGCCTCGAAAAAATCGATGATCTTGACACATTTAAGTGTCATTTAGTAAACACACATGGGAAGAAACTGCATCCAGTTAACAACGAGTTTTTAAAGTTCCGGTTGACGCTAAATAACCTAAAGTGCACAGAATGTGACAGTACTTTTCCATTCTTCGATGCTTTAAAAAAGCACATGACTGAACATTTTGGAACTTTTACTTGTGATATGTGTGGCGCATGTTTTCTAGAACAAGCTTCTTTGAGGACTCATATCAAAGCCCACAGCAAAGTTGATGTTAATTTTCCTTGTGAAATTTGCGGTAAGAATCTAAAATCAAAGTACAGTCGAGGTCTTCATATAGCAACAGTTCATGAAAAGAAACCTACTGTAAATTGTTACAAATGTGATGCTAGCTTTTTATCGTATGCTTTAAGAAATCGTCATTTGATAGAAGTTCACGGTGATAAAAGAACTTTTCCATGTAAGCTTTGTGACAAAGTGTATAATAGACGGAAGACTTTAATGGAGCACAATAGACGGAACCACTTAAAAGTTTATCGGCATCAGTGTGATTTATGTGACCAGAGATTTTATTTGCCGTCTAGATTAAAAGAACACATGGCTACACACACAGGAGAAAGGAATTTTAGTTGTGAGTTTTGTGATAAAACATATCCTAGATTGCAGTCATTGCAGGAGCATATACGTACTCATAATACAGATAGGCGGTATAAATGTGATATGTGTAATATGGGATTCACTCAAAACGGCAGTCTGAAAAATCATCTCAAGAGTCATCACCAAGAATTTGAATTGGAttctagttttaattaa
Protein Sequence: MENVKSKGPLIDPALCRCCRSIKKCRLLTTEYEWMGQKEIYSEIILDVFGILLSNLDNSSKDTCICATCVTRLREARAFRQQVLQSEEMFLQAKIEKKDVDETLNVEVKAEIFMNDISNVNDDKDCDMDTEDANDDFKLDSSLDSQKDARERIDIPKKHTKKKTKKLKKREDLSKLKHKIKLRSKFEKLLESAPTSQNKLLLKRPKIDHDYMAYMNTIAIVQNSYVCPFHNRISFYYCYYCKDQFTNPTELRDHTLTHDPKQLFENSMENKKIPKIDITRIDCRLCLEKIDDLDTFKCHLVNTHGKKLHPVNNEFLKFRLTLNNLKCTECDSTFPFFDALKKHMTEHFGTFTCDMCGACFLEQASLRTHIKAHSKVDVNFPCEICGKNLKSKYSRGLHIATVHEKKPTVNCYKCDASFLSYALRNRHLIEVHGDKRTFPCKLCDKVYNRRKTLMEHNRRNHLKVYRHQCDLCDQRFYLPSRLKEHMATHTGERNFSCEFCDKTYPRLQSLQEHIRTHNTDRRYKCDMCNMGFTQNGSLKNHLKSHHQEFELDSSFN

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00257223;
90% Identity: iTF_00257223;
80% Identity: -