Basic Information

Insect: Calephelis nemesis
Gene Symbol: -
Assembly: GCA_002245505.1
Location: NJDD01002025.1:158020-162150[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 16 1.9 1.6e+02 3.7 0.3 1 23 59 81 59 81 0.86

2 16 0.013 1.1 10.5 0.1 2 23 103 125 102 125 0.95

3 16 0.0044 0.37 11.9 1.6 1 23 147 169 147 169 0.99

4 16 0.0038 0.32 12.1 6.0 1 23 173 195 173 195 0.96

5 16 0.054 4.6 8.5 0.4 3 23 202 223 200 223 0.92

6 16 0.26 22 6.4 4.5 1 23 229 252 229 252 0.95

7 16 5.8 4.9e+02 2.1 0.2 1 10 258 267 258 275 0.82

8 16 0.0084 0.7 11.1 0.8 1 23 307 329 307 329 0.92

9 16 0.28 23 6.3 0.7 1 23 397 419 397 419 0.95

10 16 0.00044 0.037 15.1 3.0 3 23 425 445 424 445 0.97

11 16 0.00065 0.054 14.6 1.9 1 23 452 475 452 475 0.95

12 16 9.8e-05 0.0083 17.1 1.3 1 23 481 504 481 504 0.96

13 16 0.0032 0.27 12.4 0.5 1 23 510 533 510 533 0.97

14 16 0.0012 0.099 13.8 6.1 1 23 539 561 539 561 0.98

15 16 3e-07 2.5e-05 25.1 0.8 1 23 567 589 567 589 0.99

16 16 3.1e-05 0.0026 18.7 4.7 1 23 595 617 595 618 0.96

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	16	1.9	1.6e+02	3.7	0.3	1	23	59	81	59	81	0.86
2	16	0.013	1.1	10.5	0.1	2	23	103	125	102	125	0.95
3	16	0.0044	0.37	11.9	1.6	1	23	147	169	147	169	0.99
4	16	0.0038	0.32	12.1	6.0	1	23	173	195	173	195	0.96
5	16	0.054	4.6	8.5	0.4	3	23	202	223	200	223	0.92
6	16	0.26	22	6.4	4.5	1	23	229	252	229	252	0.95
7	16	5.8	4.9e+02	2.1	0.2	1	10	258	267	258	275	0.82
8	16	0.0084	0.7	11.1	0.8	1	23	307	329	307	329	0.92
9	16	0.28	23	6.3	0.7	1	23	397	419	397	419	0.95
10	16	0.00044	0.037	15.1	3.0	3	23	425	445	424	445	0.97
11	16	0.00065	0.054	14.6	1.9	1	23	452	475	452	475	0.95
12	16	9.8e-05	0.0083	17.1	1.3	1	23	481	504	481	504	0.96
13	16	0.0032	0.27	12.4	0.5	1	23	510	533	510	533	0.97
14	16	0.0012	0.099	13.8	6.1	1	23	539	561	539	561	0.98
15	16	3e-07	2.5e-05	25.1	0.8	1	23	567	589	567	589	0.99
16	16	3.1e-05	0.0026	18.7	4.7	1	23	595	617	595	618	0.96

Sequence Information

Coding Sequence: atgaaaagcagtaatgatgtttttgttttaggaGTCGATGTCTCAAAGTATTCTACAAAGGGATCTGTAGAAGTAGTATGGAAAAAGAAACGTCTACTATTCGAAGACAAAGCTAATGCTgtgttaattttagaaaattctaACGCGGTTCCGTTTAGGTGGAAGCGTGGAAAGTTCATGTGTGCTTATTGTCCGAAAATATGCCTAAATGCCGTCGAAATAAGGGAGCATTCTCAAATacataacaaattaaatctattcGATGTGCGTCATTCATTTCCTTTACGAATTGATATAACTGATCTGGAATGCGTGATATGTAATGAACGTGTTACTGATGTAAACTCTCTTAAATCACATTTGCTTAAATtgcatttcaaaataattgatGATTGTTATTCTGATGGCGTTATCCCTTTTGTTTTAACTGGCAAAGAGTTTCGCTGTGTActttgtaatgaaatatatgAATCTTTTATGGGTTTGTTTCACCACATGAATACACATTACCGGAGTTTTGTTTGTCATTCATGTGGCAAAGGGTATTCAAGCAAACAGAAATTACGGTCTCATAACAAGCATCATGAAATAGGAGAATTCGGATGTCCCAAATGTGAAATGGTGTTTCCAAATCGCGTTCTGAAAAATAGGCATGTCGCTCACGTTCACGGTCCGAAACAAAGATACCGTTGTCCAAAATGCGATATTCCTTGTAATTCGTACCACATGAGGTTGAAACATCTTGACAAATTTCatggaataaaaaatgaatacaagTGTAGTTTTTGTCCTTCAGTATTTGggCTCAACGTAAACGTAAAATGGAAAACAAAACGCAAGTACAATGACCATAGAGATAATGCTgctattattattgaatgttCGAATGCCTGCCCCTTTAGATGGAAACGCGGTGTTTTTGCGTGTTGGTGCTGTCCTAAAACCTTTGGGGATTTCGATGATGTCAGGAAACATATGTCTGTTCATTCTGATCGTTTAGCGGGCATGCAAATAGCGCgaattaatgataatattaaaattgagatAACTGATCTTAAATGCGAAATTTGTTGCGCCAATCTTAAtagtttaaatgattttattgatCATTTGGCTTCCGTACATGATAGATCTATAATACAAGACTATGGTCTAGGTGTGACCCCATTTTTATCATCCAATAATGAGTTTGTGTGTGCTCTTTGTGCTGACCATTTTGCTTTGTTCTCTAGTCTGAATAGTCACATGAACCAGCATTATCCTAACAATATTTGTTCTCACTGTGGCAAAACTTTTGCTGTCAAGCATAGAATGAAAGCTCATCAACTCATCCACGAAGCGAGAaacaaatcatacaaatgtaCCAAATGTGATGaagtttttgaaacaaaatccTTGAAAAATTATCACGTACAGAACAGGCACGGTTGCGAAAATAGATATCGTTGCCCGTATTGTAATGAATCTTTTAAACGTTACATAGATAGGTTGCGTCATCTGAAGGAATTGCACgaaaaaattatagaatatCCTTGTCATCTATGTTCAGCTGTATTCGCTTTGTCTGCTCAAAGGACGAAACACATTAGatatgttcatttaaaaaatactaattaccaATGCACATTTTGTTCTCACAAATTCGTCACTGCGTATCATTTAAAGAGCCATTTGGTTAAACACATTGGTGTTAAGAAATATCAGTGCGACGTCTGTAAGAAAAGTTATGCTAGGGCGAAAACTTTGAAAGAACATATGCGTATACATAATAATGATAGACGATTTGTATGCGAATATTGTAATAATGCGTTCGTTCaaaaatgtagtttaaaaaGCCACATACGGACACATCATACGAATGAGGAAAGTTTGAAAAGGTTTAActga
Protein Sequence: MKSSNDVFVLGVDVSKYSTKGSVEVVWKKKRLLFEDKANAVLILENSNAVPFRWKRGKFMCAYCPKICLNAVEIREHSQIHNKLNLFDVRHSFPLRIDITDLECVICNERVTDVNSLKSHLLKLHFKIIDDCYSDGVIPFVLTGKEFRCVLCNEIYESFMGLFHHMNTHYRSFVCHSCGKGYSSKQKLRSHNKHHEIGEFGCPKCEMVFPNRVLKNRHVAHVHGPKQRYRCPKCDIPCNSYHMRLKHLDKFHGIKNEYKCSFCPSVFGLNVNVKWKTKRKYNDHRDNAAIIIECSNACPFRWKRGVFACWCCPKTFGDFDDVRKHMSVHSDRLAGMQIARINDNIKIEITDLKCEICCANLNSLNDFIDHLASVHDRSIIQDYGLGVTPFLSSNNEFVCALCADHFALFSSLNSHMNQHYPNNICSHCGKTFAVKHRMKAHQLIHEARNKSYKCTKCDEVFETKSLKNYHVQNRHGCENRYRCPYCNESFKRYIDRLRHLKELHEKIIEYPCHLCSAVFALSAQRTKHIRYVHLKNTNYQCTFCSHKFVTAYHLKSHLVKHIGVKKYQCDVCKKSYARAKTLKEHMRIHNNDRRFVCEYCNNAFVQKCSLKSHIRTHHTNEESLKRFN

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -