Cnem005033.1
Basic Information
- Insect
- Calephelis nemesis
- Gene Symbol
- ZEB2
- Assembly
- GCA_002245505.1
- Location
- NJDD01001910.1:15561-44270[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 19 0.086 7.2 7.9 0.1 1 23 236 258 236 258 0.95 2 19 0.016 1.3 10.2 4.5 1 23 263 286 263 286 0.96 3 19 0.049 4.1 8.7 5.9 1 23 290 313 290 313 0.96 4 19 9e-05 0.0076 17.3 5.4 1 23 316 339 316 339 0.97 5 19 0.0015 0.13 13.4 1.0 1 23 342 365 342 365 0.93 6 19 0.5 42 5.5 1.0 2 21 374 393 373 398 0.93 7 19 0.02 1.7 9.9 1.2 2 23 405 427 404 427 0.89 8 19 1.1 95 4.4 1.3 1 23 433 456 433 456 0.86 9 19 3.9e-06 0.00033 21.6 0.7 3 23 469 489 468 489 0.98 10 19 0.00089 0.074 14.1 1.6 1 23 495 518 495 518 0.97 11 19 0.56 47 5.3 4.6 1 23 735 758 735 758 0.89 12 19 0.079 6.6 8.0 2.3 1 23 762 785 762 785 0.95 13 19 8.2e-05 0.0069 17.4 2.9 2 23 789 811 788 811 0.96 14 19 0.0042 0.35 12.0 6.6 2 23 815 836 815 837 0.95 15 19 0.014 1.2 10.4 1.3 2 22 850 870 849 874 0.92 16 19 2.5e-05 0.0021 19.0 0.2 2 23 883 905 882 905 0.94 17 19 0.013 1.1 10.5 1.2 1 23 911 934 911 934 0.92 18 19 0.00031 0.026 15.6 0.4 3 23 945 965 944 965 0.98 19 19 0.0064 0.54 11.4 0.6 1 23 971 994 971 994 0.98
Sequence Information
- Coding Sequence
- ATGACAGATATAAAATTAGAATTCGGAGTGGAAAATGACGAGCATACATGTCGTGGCTGTTTAAGTGTTAATCGTCAAGTGAAACTTTTAGATAATAATATCGACTTGTATTTGATGCTATtggaaaataaaactaatttggcTGATCCAGaactgaaaatattattatgttgggAGTGCATTGCACTGTTGAAAAGAATTAAGTCATTCCAGAGCAGGATTAAAAGAGCCCAATATGAGTTAGGTAATCTGttcaaattttcactttcaTCACTTACACAAGTTAACAAATTGGGTTATGATGTAGAATATGATGGAACATATTACGAAGAAGTTAAAGTAGAAAAACCACCGAAACTAGAAGCCTCGGTAATTGACGTCAAAGAAGAGTCATGGGATACAACAAGAGTTTCAGATTACGAACCAGACATAAATACAGACTCACAGACATATATTATAGAAAGAAAAACGAAAAGACAACCTAAGTCACATGATAAGCAATCGGTGTCTAAGATGCCTTTTGACATTAGTAAAATGGATATGTATGTCAGTGAGATAGCACACAGTGTAAGTGATCTGGAATTATTTAAGAAGCAGAAGAAAGATCTGTTTAAACGTGCAATGCCTAGGCCTTTTCTCATTAAGCTGAAAAGATTTTTGGACATGAAAAAAACGGATTTCTCTAGACCAGCAACTGAAATAGTATACCCATGTAGTAAATGCAAAAATCTGTATCCATCTTTGGAATCTCTTAAGGCACACTGGGAGGAGCACACTATGAAAACATTTCGGTGTGATCTCTGCAAAAAGCACTATGCAAATCAATCGGACTTGCAGTTCCATTTCAAAACATCTCACTCCTACGTTTACACTTGCAAAGTGTGTGGCACAACTTGTTGTTCCCTCCGCGAATATTACAGCCATTATCGGGACTTGCATGATTTCTTCACATGTGACCATTGCAAAAAGCGATACAGGAATAAATTTGTACTCGAGAGGCATATGAGACTCCGTCACAGCGACTACGTGTGCAAGGAGTGTGTCAAAACGTTCCAAACGTTGAACTCGCTGGTGCGCCACAACAACGAGTTCCACGTGAAGTCCGACAAGGAGCTGTCGTACTGCGTCGAGTGCAACATACAGTTCGACAACATAGCCAAGTACACCAAACACTTGAAACACAGCGTCAAGCACCGCAAGAGCACTGCCACACCGTGTCCGATCTGCAACAAAGTATACAACACAAAGTACGGGATGACTTGCCACTACAACTACGTCCACCTCAAGAAGACCAAGTTCTACTGCGACATTTGTGACAGGtatttCCTACACGGCACCCGACTGAGGGACCACAGGGCGAGCGCACACAATATCACAAACAAACCACaggtcaaaaacaaaatatgtccgCACTGTGGAAAAGCCTTTAAGACAAACGCAATATTAAACAACCATATCCGCACACACACGGGCGAGAGACCATTCTCCTGCACGCACTGTACCTTCACGTTCGCCCAACGTGTGGCCATGGTCTCGCACATGAGCACCGTACACAAAATCGGGACGTACATACGGAAAAAGAAATCCTCGAAACGGAAGTCGGACAGGCCCGAACCCTCGgtcAAAACTTCATTATCATCCCTTACATTTATTAGTAAAGCAGATTTTGATGCAATATATGATGGAACCATTTTAGATGATATCAAAGTAGAACAGATTTTGTCAAAAGTTGAAGTCTCAGTTGCAGACATCAAAGAGGAATCACAAGATGCATCCGATGGTGATATTTATGAACAAGAACCTGAGACAAACATAGATGATTCAGACACATACAAAATAGATATAGATATGAATAGTATAGATAGGAAACCTAGGAAACATTACAAGTATTCAAATAAGCTAAATGTAACCAGAACTCCTTTTGATATGAATAATGTAAATCAATATATAAGGCAAGTGTCACACAGTTTGAAAGAGATAGAATCAttcaaaaaagagaaaaaagatttatttaagcatataaTGCCAAGAAAATTCCTGAGTCGTTTAAAAAGATTGTTGGCTTTGAAGAAAAAAGACTGTTTGTTGGATACAacagattgtaaaaaaaatACATCCAGACATATATGCAATCACTGCATGAGTGTGCTGCCATCTAACCAGGCTCTGGTGGAGCACTGGGAGCAGCACACGGTGGAAACATACCAATGTAACCTTTGCAACAGGCACTACATGCGACACTCGGATCTGCCGttacatttcaaacaaactcACTCTTATATTTATACTTGTAAAGAATGTGGAATCAGTTTGTGTTCTCTCCGAGAGTACTACATGCACAATCGGCAGCTCCACAAGGTGCTGTCGTGTGACTACTGCGGGAAGTGCTACAAGAACAAGCTGTCTATCGAGAAACATATCAGGCGTAGCCATCTACCcgcaaaatgtaaaatttgtaatCGAACATTCGAGAAGTACGACAAGTATCGCAAGCACAAGAGGAACCACCACCAACAGCCGGCCACGGGCCCCGACCGCGAGCTCTGCTACTGCGTGGAGTGCGACCTGCAGTTCGAACACATGGACGCCTACAAGCGCCATCTGCGGACCGCCGTCGTGCACAAACCCAAGGTGCCCAAGAGAGTTCCGTGTCCGGTGTGCGGTAAAATTTTCACGAGGACCAGCTACATGCGGAACCACTACCAACTCATCCACAACAAGAAATCCAAACACTACTGCCAGATCTGTGATAAGTACTACATAAATGGTTTTGGTCTCCGCAAGCACATCGAGTTCGTCCATAACAAACACGAAAAGCCGAAAAACAAGATCTGCGACCTCTGCGGCAGAGGGTTCAATgcaAACAGAACATTAATCAACCACAGACGGACACACACGGGCGAGCGGCCATACCAGTGTGCTCACTGTCCGGCCGCTTTCGCACAACTGACAGCCAAAAAGTCTCACGAACGAACACAACACAAGAATGTTGCCGGTTAA
- Protein Sequence
- MTDIKLEFGVENDEHTCRGCLSVNRQVKLLDNNIDLYLMLLENKTNLADPELKILLCWECIALLKRIKSFQSRIKRAQYELGNLFKFSLSSLTQVNKLGYDVEYDGTYYEEVKVEKPPKLEASVIDVKEESWDTTRVSDYEPDINTDSQTYIIERKTKRQPKSHDKQSVSKMPFDISKMDMYVSEIAHSVSDLELFKKQKKDLFKRAMPRPFLIKLKRFLDMKKTDFSRPATEIVYPCSKCKNLYPSLESLKAHWEEHTMKTFRCDLCKKHYANQSDLQFHFKTSHSYVYTCKVCGTTCCSLREYYSHYRDLHDFFTCDHCKKRYRNKFVLERHMRLRHSDYVCKECVKTFQTLNSLVRHNNEFHVKSDKELSYCVECNIQFDNIAKYTKHLKHSVKHRKSTATPCPICNKVYNTKYGMTCHYNYVHLKKTKFYCDICDRYFLHGTRLRDHRASAHNITNKPQVKNKICPHCGKAFKTNAILNNHIRTHTGERPFSCTHCTFTFAQRVAMVSHMSTVHKIGTYIRKKKSSKRKSDRPEPSVKTSLSSLTFISKADFDAIYDGTILDDIKVEQILSKVEVSVADIKEESQDASDGDIYEQEPETNIDDSDTYKIDIDMNSIDRKPRKHYKYSNKLNVTRTPFDMNNVNQYIRQVSHSLKEIESFKKEKKDLFKHIMPRKFLSRLKRLLALKKKDCLLDTTDCKKNTSRHICNHCMSVLPSNQALVEHWEQHTVETYQCNLCNRHYMRHSDLPLHFKQTHSYIYTCKECGISLCSLREYYMHNRQLHKVLSCDYCGKCYKNKLSIEKHIRRSHLPAKCKICNRTFEKYDKYRKHKRNHHQQPATGPDRELCYCVECDLQFEHMDAYKRHLRTAVVHKPKVPKRVPCPVCGKIFTRTSYMRNHYQLIHNKKSKHYCQICDKYYINGFGLRKHIEFVHNKHEKPKNKICDLCGRGFNANRTLINHRRTHTGERPYQCAHCPAAFAQLTAKKSHERTQHKNVAG
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -