Cnem025661.1
Basic Information
- Insect
- Calephelis nemesis
- Gene Symbol
- -
- Assembly
- GCA_002245505.1
- Location
- NJDD01002025.1:164863-167529[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 14 0.088 7.4 7.9 0.7 1 23 61 84 61 84 0.92 2 14 3.8 3.2e+02 2.7 0.4 2 23 115 136 114 136 0.76 3 14 6e-05 0.0051 17.8 2.9 1 23 158 180 158 180 0.98 4 14 0.00039 0.033 15.3 0.5 1 23 184 206 184 206 0.94 5 14 0.0071 0.6 11.3 1.0 1 23 211 234 211 234 0.88 6 14 0.0043 0.37 12.0 4.4 1 23 240 263 240 263 0.96 7 14 0.00019 0.016 16.2 0.3 1 23 270 293 270 293 0.98 8 14 1.3e-05 0.0011 19.9 1.3 1 23 299 321 299 321 0.96 9 14 5.6e-07 4.7e-05 24.2 3.2 1 23 327 349 327 349 0.99 10 14 1.4e-05 0.0012 19.8 2.6 1 23 355 378 355 378 0.97 11 14 6.5 5.5e+02 2.0 0.1 1 23 507 530 507 530 0.87 12 14 0.00067 0.056 14.5 0.6 2 23 555 577 554 577 0.95 13 14 0.041 3.5 8.9 0.1 3 23 603 623 601 623 0.97 14 14 0.001 0.088 13.9 0.4 1 23 627 649 627 649 0.98
Sequence Information
- Coding Sequence
- ATGCACGTGTGTTTATCATTTTTAGGTGAAAACAACGATAAGAATTTGGAATTGGAAGCTTCACGTTTGCGAACtattaaaaaacttcaaaatctgGATGATATAGAAGCTATTAAGCATAATGCTCGTATTCTGCTTGAAAATACAACGATATGCCCATTCAAGTGGAgaagaaatatgtttatttgttttcattgtGACAACGAATTTCTGGACCTGTCCAATTTGCGAGagcataatttaattatacataattcaCAATGTCCCGTTCAAATTCAACGTGCAATATCAGAGTACAGTAAAAAGAAAAGTGTGCTCGTTAAAGTAGATATAACAGATTCACGTTGTAAAATATGTGGACAGAAAATGGATTTTGTTGAAATGAAGAACCATTTAAACGAAGAACATAAGAAATGTGtagatttaaatgtaaaagatGGTGTTCTTCCATTCAAACTTATAGAAGACACCTATACATGTGCACTTTgcgataaaaaatttaatgagtACAAAACATTAAACCACCACATGAATATACATTACCAGAATTTTATATGTGATCAATGTGGCACCggtttcattacaaaaaatagtttaagaaTTCATTCATTTTCTCACGAGACCGGATCTTTCGCTTGCGAAGAGTGCGATAAAGTCTTTCGATCAATGAACTCTAAAAATGAACACTATGCTCATGTTCACAAAAAAGTCAAAAGACATCGGTGCTTACAATGTCATGAGGCGTTTAGTAATTATTATCAAAGGAATAAACATATGTCTATTGTACATGGCATCAAACTAAAAGAGTTTAAATGCTCTTTTTGTGCGAAAGTATTTACTTTGAGCGGCAAATTGGGTGTTCACATAAGAactgtacatttaaaaattaaaagacatGCGTGCAATGTGTGTGAATGGAAGTTTTATTCTAAATCAGAATTAAAAGATCATATGATTCGGCACAGTGGAGATCGCAAGTATCAATGCAATGTGTGTAAAAAGTTCTACACACGAAAATATACTTTAACCGAACATATGAGGATTCATGAAAATGACAGACGATTTGTGTGTAGCGTATGCGGTGCATCATTTGTGCAGAAATGCAGTTTAAAGCATCATATAAAAGTTAACCATCCTACACTAAAAGAAAgATTGGACTGTGAATTAACGTCGGATAATCAAGCTTCAACTCAAAGAGTTACTCCACTTTTTCAAGTGGCATATGATCGGACTCTTTGTAAACCATTGGGAACAATTTCAAACTTCAAAAAGTTACAATCGAACACTACGAAATCGTCCAAATTTACACGTTTGAAAGATAATACACCATCACGTAGTCCTTCACCTTTATCTTTAGATATACTGTCATTGTCACCTACCACACCCATTTTGGATCCATCACAAGTAACAGTACCAATACCAAAGTCGCCGAAGAAAAAGCAACCAGATTATCGTCAAAATGCATTAACTGTTTTTGAATTCTCAACTGTCTACCCTTTTATATACGgcaataataaattcaaatgttttgtttgtGCACAAGCTTACCTAGAATTACCACTTTTAAGACTTCATATGAACGATTCTCACACATTCGTCGCTATCAAGAGGCTTTTAAACAATAGAagacaaaatgtattaaaggtAGATGTTGACATACTAATTTGTAATGTATGTTCTTTtagttttgataatttaaatcaGTTAAAATATCACTTAAGAAATGATCATGGAAAGCAAATAGACCCAGATTTACAAGATAATATGATACCTTTTAAATTAGATGTTGGAAATGGAGGTTATGGTTGTGTGGTTTgcaatgaaaattttattaagattcgTACATTAGTGATACATATGAGTgtgcattttaataattatagttgTGAATTTTGTGGATCAGGTTTCATGACATTACGCTTGTTGAAAAAGCATTTGGAAGTTCATGAAAGTGGTGTCCAATGTGTCCAGAGAGATTTAATTCGAATTACCGAAGAACAATCCACCTTCAAAATGTTCATAACCAATCAACTAGGGTCCACAAGTGTGAGACATGTGGACGGGCTTTCAATTTAA
- Protein Sequence
- MHVCLSFLGENNDKNLELEASRLRTIKKLQNLDDIEAIKHNARILLENTTICPFKWRRNMFICFHCDNEFLDLSNLREHNLIIHNSQCPVQIQRAISEYSKKKSVLVKVDITDSRCKICGQKMDFVEMKNHLNEEHKKCVDLNVKDGVLPFKLIEDTYTCALCDKKFNEYKTLNHHMNIHYQNFICDQCGTGFITKNSLRIHSFSHETGSFACEECDKVFRSMNSKNEHYAHVHKKVKRHRCLQCHEAFSNYYQRNKHMSIVHGIKLKEFKCSFCAKVFTLSGKLGVHIRTVHLKIKRHACNVCEWKFYSKSELKDHMIRHSGDRKYQCNVCKKFYTRKYTLTEHMRIHENDRRFVCSVCGASFVQKCSLKHHIKVNHPTLKERLDCELTSDNQASTQRVTPLFQVAYDRTLCKPLGTISNFKKLQSNTTKSSKFTRLKDNTPSRSPSPLSLDILSLSPTTPILDPSQVTVPIPKSPKKKQPDYRQNALTVFEFSTVYPFIYGNNKFKCFVCAQAYLELPLLRLHMNDSHTFVAIKRLLNNRRQNVLKVDVDILICNVCSFSFDNLNQLKYHLRNDHGKQIDPDLQDNMIPFKLDVGNGGYGCVVCNENFIKIRTLVIHMSVHFNNYSCEFCGSGFMTLRLLKKHLEVHESGVQCVQRDLIRITEEQSTFKMFITNQLGSTSVRHVDGLSI
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -