Cnem006134.1
Basic Information
- Insect
- Calephelis nemesis
- Gene Symbol
- L
- Assembly
- GCA_002245505.1
- Location
- NJDD01003482.1:63408-72112[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 17 0.5 42 5.5 5.8 1 23 3 25 3 25 0.97 2 17 6.7e-06 0.00056 20.8 4.1 1 23 31 53 31 53 0.99 3 17 2.1e-05 0.0017 19.3 0.1 1 23 59 81 59 81 0.98 4 17 0.00014 0.012 16.7 0.1 1 23 96 119 96 119 0.96 5 17 7.6 6.4e+02 1.8 0.1 9 23 152 167 148 167 0.93 6 17 0.62 52 5.2 0.0 3 23 222 242 221 242 0.97 7 17 0.0045 0.38 11.9 0.1 2 23 256 277 255 277 0.94 8 17 0.0077 0.65 11.2 0.5 1 23 285 308 285 308 0.93 9 17 0.017 1.4 10.1 0.1 1 23 313 335 313 336 0.93 10 17 0.0015 0.13 13.4 0.3 1 23 338 362 338 363 0.96 11 17 0.00016 0.013 16.5 0.1 2 23 419 440 418 440 0.96 12 17 0.046 3.9 8.7 0.0 1 23 448 470 448 470 0.98 13 17 0.57 48 5.3 0.7 2 23 478 499 477 500 0.94 14 17 2.7 2.3e+02 3.2 0.1 3 23 507 527 506 527 0.94 15 17 0.37 31 5.9 0.6 1 23 574 596 574 596 0.94 16 17 0.0043 0.36 12.0 0.1 1 20 604 623 604 626 0.95 17 17 0.081 6.8 8.0 0.3 1 23 633 655 633 655 0.94
Sequence Information
- Coding Sequence
- ATGCCGTTTCGATGCGAGTTCTGCTCCAGATTGTTCAAGCACAAGCGTTCCCGAGACCGTCATGTCAAATTGCATACAGGAGACCGAAAATATAGATGCGCTCACTGTGAATCTGCCTTCTCTAGAAGTGACCACTTGAAGATCCATATGAAAACACACGACAACCAGAAACCATTCCAGTGCACCGTGTGCAATCGAGGGTATAACACCGCTGCTGCGCTCACCTCGCATATGCAAGGCCACAAGAGAGACCGAGAGGGTCGGGAAATTGACCGTCGTCGAGCTTTCCGTTGCTTACGCTGTGGAGATGCATTCCGTCGGCCTGACATGCTTCAGGCACACATGGCAAGTGCTCATGGGAGCCCCTTAGATACAACTTCTATGACACCTCCTCGACGAGTAGCATCTCAACCTCCACCGACACTACTTGCCTGCATATACTGCACCCGTGATACATTCACCAGTATGGAGCAATTAGAACTTCATGTTCGAGCAGCACATTCCGCCATACTGAACGGAGAAGGACTTGGGCAGTATTTGGTGGATCAACCAGCACCAACTGACTTAAGCAGGCGCGGCACAAATGAACCAACTATCAAACGTCCAAAACTAAGTTCAGGTTCAGCAACACCTCAAACAACACAATCTCCAAGCAGTTGGTTATGTAGTCAGTGTGATGCTGCTTTGCCAGATTTTGAGGCATTCAGAGCGCATGTTAAAGAACATCTCGAAAAAGGAGGAGATCTAAGTcgttcaagtccaacaccttgtCTCCATTGTGGAGCTACATTTTCTGATGCCGCAGCCACGGAACGGCATCTGGCTGCACACTATTTGGCAATATCCTGTGAATACAACTGTCATAGTTGCGCTCGGAGTTTCCAAGCACCGGAAGATCTTCAGAAGCATCTCCTAGACGTACATGCTCATATCTTATATCGTTGTGCTTTGTGTAAGGAAGTGTTCGACTCTAAAGTTGCGATTCAGGCTCATGCTGCGGCTCACCACGCTTATCGCTGTCCTGTACCGACATGCACTGACTCCTTCGCTGTACAGTACCTGCTAGAACGGCATATGCAGGCGCATCATACCATTTCTCCACAGAACCTGAATGGAGATTTATCACGCTTGAAACAATCGGAAAACAACAACACCATGGAAAGAGAAGATCGCAATTCGCCAATAGTTCCTGTTAGTGAGGCGGCTTCAAATGTGACTGAAGAACGTCGTCGCAAGAACGGAGCTGTGGCGCTGCAATGTGCTTACTGTGGAGAGCGGACACGGAGTCGGGCGGAGCTGGAAGCACACACTCGGGCCCACTCGGGCGCTGCTGCCACACGACACAAGTGTCTCATCTGTGATGAGGTGTTGCCCTCAGCTGCTGTGCTGGCTGAACACAAACTTACTCATTGCAAGGTAATAGCTGGAGACACTTGTTCACGGTGTCGCGCGAGACTACCTTCAGAAGAAGCTTTCCTTAACCATATGGCGCGTCATCATCCCGCCCTCCCAGCACCCTGCGTCATATGTCGACAGACTTTATCATCCGAAGCAGAAGCACGCCTTCACGCTAGATTTCATTTACGACCAAATGAAGATGAACAAAGATGTGCGATATGTCTTAGAGCTTTATCAGAAAGTGAGGCAGGGGAAGGGGCAAGAGCATGTTCACTATGTTATGCTCGTCATACTGCCCCCAGAGCACCTCCACCGACCGATCATGATTGCAGACTATGCCGTCGGACTCTTGGTTCTCCAACACGTCTTCAAGCACATCTCATAGAGCATACTTTCGCTGGAATTGGAGCATTTACATGCTATTTATGCTCAGCTATGTTCACAAGCGCAGCTGGTCTTCAAAGACATTTACCAGAACATGCTACAGCTACAAGGCCTTACGACTGTGGTCGGTGCGGTCTTAAGTTTTTCTTCCGTGCTGAATTAGATAACCATGCATTTGTACATCTAGAAGAAGCTGAGATAGCGCAGAGGGCTTTTTATGAAGCCTACGCACGTGGAGCGGCATCTGCTTGGGCTGCATTGCAACCTGGTGAACCAGCAAAAGTAGCAATCACCACACCTACACCAACAGCTGAAGTGACAGTGAAACAAGAACCAGAAATCAAAGAGGAACGAAACGATGAGTatatagaagtatcttcacccccgcCTCCACAAGCAGCGGCATCTCCACCTCCAgttgttaaaaaagaaaagcccGATGAAGAATAA
- Protein Sequence
- MPFRCEFCSRLFKHKRSRDRHVKLHTGDRKYRCAHCESAFSRSDHLKIHMKTHDNQKPFQCTVCNRGYNTAAALTSHMQGHKRDREGREIDRRRAFRCLRCGDAFRRPDMLQAHMASAHGSPLDTTSMTPPRRVASQPPPTLLACIYCTRDTFTSMEQLELHVRAAHSAILNGEGLGQYLVDQPAPTDLSRRGTNEPTIKRPKLSSGSATPQTTQSPSSWLCSQCDAALPDFEAFRAHVKEHLEKGGDLSRSSPTPCLHCGATFSDAAATERHLAAHYLAISCEYNCHSCARSFQAPEDLQKHLLDVHAHILYRCALCKEVFDSKVAIQAHAAAHHAYRCPVPTCTDSFAVQYLLERHMQAHHTISPQNLNGDLSRLKQSENNNTMEREDRNSPIVPVSEAASNVTEERRRKNGAVALQCAYCGERTRSRAELEAHTRAHSGAAATRHKCLICDEVLPSAAVLAEHKLTHCKVIAGDTCSRCRARLPSEEAFLNHMARHHPALPAPCVICRQTLSSEAEARLHARFHLRPNEDEQRCAICLRALSESEAGEGARACSLCYARHTAPRAPPPTDHDCRLCRRTLGSPTRLQAHLIEHTFAGIGAFTCYLCSAMFTSAAGLQRHLPEHATATRPYDCGRCGLKFFFRAELDNHAFVHLEEAEIAQRAFYEAYARGAASAWAALQPGEPAKVAITTPTPTAEVTVKQEPEIKEERNDEYIEVSSPPPPQAAASPPPVVKKEKPDEE
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01437318;
- 90% Identity
- iTF_00257165;
- 80% Identity
- -