Cnem025665.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Calephelis nemesis
Gene Symbol
-
Assembly
GCA_002245505.1
Location
NJDD01002025.1:178583-191336[+]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 16 0.04 3.3 8.9 0.8 1 23 217 240 217 240 0.96
2 16 0.0032 0.27 12.4 0.4 2 23 265 287 264 287 0.94
3 16 0.0044 0.37 12.0 0.1 1 23 311 333 311 333 0.97
4 16 7.8e-05 0.0066 17.5 0.3 1 23 337 359 337 359 0.98
5 16 1.3 1.1e+02 4.2 7.1 1 23 364 387 364 387 0.93
6 16 0.0036 0.3 12.2 0.1 2 23 394 416 394 416 0.97
7 16 0.00062 0.052 14.6 0.7 1 23 935 958 935 958 0.97
8 16 0.78 65 4.9 2.1 2 23 984 1005 983 1005 0.95
9 16 0.00065 0.055 14.6 0.7 1 23 1027 1049 1027 1049 0.98
10 16 2.6e-05 0.0022 19.0 0.7 1 23 1053 1075 1053 1075 0.98
11 16 0.0008 0.067 14.3 0.8 1 23 1080 1103 1080 1103 0.95
12 16 0.00037 0.031 15.4 1.3 2 23 1110 1132 1110 1133 0.96
13 16 0.00019 0.016 16.3 0.2 1 23 1139 1162 1139 1162 0.98
14 16 0.007 0.59 11.3 8.1 1 23 1168 1190 1168 1190 0.97
15 16 5.3e-06 0.00044 21.1 0.8 1 23 1196 1218 1196 1218 0.99
16 16 0.4 34 5.8 1.2 3 23 1224 1244 1223 1245 0.94

Sequence Information

Coding Sequence
ATGTCAGATGAAGCAACACCTCCAAGAATCAGACCAATATTTAAAGTGGCCTACAATAGATCTCTATGCAAACCTTTGGGAACAATatcgaattttaaaaaaatagatttcagtaaaataaaaaattcgtcAACACGTTCTGCTTTGATACAATTTAGAAAAGCAGGTAGCTCGTCGCTTGTAACTTTGGATAAGACATTTTTATCTTCCAATAAATCGGAATCTGATATACCATTTCCTAAGTCTATGCTCGACAAGCGAACTGACGGAAACAAAAATGCATTAATAACAACATTTTCCCGGAATACGTCTGATACTAAAAAGTTTCTATCTCATAGCATGAAGTCAAAGTTTAAAGTCTCTTATGATCGGTCGCTTTGTAAGCCATTAAATACCatttctaactttaaaaattgtgaattgaaaatacttaaaaatacatttgttttcaataaatCAACCCAACCTGTATGTCCTTCTCGTGTATCGTTACTAAGAAATGCTAAACGCAaacctaaattaaaaactttagtaAGCAAACCAGACAATATCTTACACGCATCTAGTGCTCGTGCGGACAGTtacaaaaatgcatttttagtTTTCGAATTCTCCACCGTGTATCCTTTTCTTTATCACAAtggaaattttaaatgtattgtttGCTCACGACCTTTTCCAAAATTAGTATATTTGAGAGAACATACGAAAACCCGTCATTCAATATTTACTATTAAGAGATCAATAATACATAAACGTGCAGAAATGTTAAAAGTAGATGTCGGTATTCTCGAGTGTTCAATATGCTCTAAGAAGTCAAATAGTTTATCGGAATTAAAATATCACTTGAAGGCAGAACatgatttgttaataaatttggaTTTGCAAGATAATATGATTCCTTTTAAACTCGACGGTGGATTTGATGGTTATAACTGCGTTATGTGTAacgaaaattttgtgaaaatacgAGATTTAGAAATACACATGAATGATcactttaataattatagttgTGAATATTGTGGTTCAGGTTTTATCActttaagaaatttgaaaacacatttagaaattcacgaaaacaaaaaatttgcaTGTTGTAAATGTAGAAAGTGTTTTAGTACagcatttaaaagaaatcaacATGAAAAACTAGTTCATATTAAGCAGTGTTTGAGAAAATGCCCTATGTGTCCTGAAGCATTCCCTTCATATTATGGAAGAACTATACACATGCAGAAAGTTCACAATAAACTTGTAGGAAGATACAAGTGTGAACCATggCCACACATTGAAATCACTTCCGGCGATGAGGCAGAGCTTCGAGGTATTAGGCGAATTTTTAAAGTGGCTTATGATTGGAAACGATGTAAGCCATTAGGGacgatttcaaatttaaaaaaattaaatttaagtgcaTATAGAAAAGCATCAACAATTTCAATTGTTAAAGAGTATTATAAATCACGAAGTCCTTCAGTTTCCTATGTGAATATTCAACCTTGTTCTTCCATCGTGAATGTTCCTTGTGCGCCCAACCCAATTAAAAAGATGACCAGAAATCTGCTAACCATTGACGAACTAGAAAAACAAGTGACTCAAAGAATTTCCCCGCAGTTAGAAGTTCCATGTTGTAGTGAACTATGTGACGATGCAGAAGTCATTTTGCATAGGCGGCAGAACAGAAAGAGGCGGTATGTGATAGAAAGTGGTGACGAAGATGAAAACCCAGAGCAGCAGGTTAGCACAAGGCTTAAGACCGATTTATGGTATGAACCAGCGGTTAGATTACCTAAGCTAGCTGATTATTGGTCAACAGACCCCCTCATATGCCAATCTTTCCCGCGTACAGTTATGTCTCGAAAcagatttgaaattttattacgaATGGTACATTTTTCCAACAACGATAACCAAAGATATGGCGACCGTCTGTTCAAGATACGTGAATTGGTTGATACTTTGAATCTcaactttaaaacatattactaCCCTCAAGAAAATCTCTGTATTGATGAGTCTCTAGTACCATTTCGGGGTCGCATTATATTCCGACAATATATCAAATTGAAGAGGCATAAATAtggaattaaagtttttaaattatgtactaACACAGGCTACACTAACAGAATTCAAATATATGCGGGAAAGAGAGGCGAGACTGAAACTACAACCCCAACCAATGTTGTGATGTCACTTATGGAAGGATATCTTGAAAAAAGTCATACATTATTTACCGATAATTGGTACACCAGTATTGGTCTCGGCCGCAAACTGTTGGACAAAGAAACGCATCTTGTGGGCACTTTAcgtgaaaatagaaaatatttacctaagGATGTTATAAAtggaaagataaaaaaaggagAGTTTAGAGCTAAAGAAAATGAAGATGgaaTCATCATTAAAAGCGATTCTTCGATTATTTTAAAGGATGATGATGGAACAGAAATTAAACTTGCATTGCTAAAAAATCCTATAGATTTATCAGAcctaaaatgtgaatttgaaAATTCTGGATCAAAGAATACTAATCTGACAAGgaaatttaaaaaggaaaatacgAGTGCAGCAAGAGATGAATTTGGAGATGATAATAAACCATTATCGCTAGaagtttttgagaaaaaaaatataactaactgTTCTGGAAGCGTTCAagtgaaaataagtaaaaacgCGTACGGTTTGAAAGCAGTTAAAAGATTGACCTCAGTAGATTGTGAAATTTCTAAACAAAATGCATTAACTATTTTCGAATATTCTTATGTGTATCCTTTTATTCACGcgttaaacaaatataaatgttttgtttgtacCAAAACGTTCATAGAAGCAAATTCGTTGCGGGAACATACTATTAAAGAACATAATGTTAAAGATATAAGACGAGAAATGTGCAACAGAGTAcgtgacaaaaacattaaagttgATGTGACAATATTGCGTTGCAAGATTTGTCTGGCTATTTGTGATAATTTCAGTTTTCTGAAATCCCATTTGAAAGATCatggtaaaaatataattccaGACTTTCAAGATAATATAATTCCATTTAAATTGATAGATGGAGATTTTAAATGTCAGATTTGCCAAGAACCATTCTTTAAATTGCGATTGTTAATCATACACAtgagtaaacattttaaaaactatagcTGTGAAATTTGTGGTTCAACGTTTATTTCATTACATCTGCTTAACCGACATTTGCAAATCCACAAGCTAGGAAATTTTCCTTGTGACAAATGTAACAAAGTATTTACAAATTCAGCAAAAAGATCTTTACACTATAGAGGAGTTCATCTTAAGCAATTTCTACGCACGTGTCCTATTTGCCCTGAAAGATTCAACTCTAATTATCAAAGATCAAAACATTTACGAATTGTACACCATCAAAATACTGCAACTTTTACTTGTGCCACTTGCGGTAAGGAGTACGATTTAAAATATCAGTTACTTATTCATATCCGGTCTGTGCACATGCATGAACGAAATCACGAATGCAAAATTTGTCATACCAGATTCTTTTCGAAATATTGTCTATCAAGACACATGGTTGTTCATACGGGAGAAaagaattttaaatgtaacatatGTGCAAAGGCTTACGCCAGACTAAAAAATCTTAGGGACCACATGAAGTCACATCAAGATGGAAATATGTGTTCCGTATGTGAATTGTATTGCGGAGACCAAGTGTCACTACTTGCCcatgtaaataaacatcacCACACGAGATAG
Protein Sequence
MSDEATPPRIRPIFKVAYNRSLCKPLGTISNFKKIDFSKIKNSSTRSALIQFRKAGSSSLVTLDKTFLSSNKSESDIPFPKSMLDKRTDGNKNALITTFSRNTSDTKKFLSHSMKSKFKVSYDRSLCKPLNTISNFKNCELKILKNTFVFNKSTQPVCPSRVSLLRNAKRKPKLKTLVSKPDNILHASSARADSYKNAFLVFEFSTVYPFLYHNGNFKCIVCSRPFPKLVYLREHTKTRHSIFTIKRSIIHKRAEMLKVDVGILECSICSKKSNSLSELKYHLKAEHDLLINLDLQDNMIPFKLDGGFDGYNCVMCNENFVKIRDLEIHMNDHFNNYSCEYCGSGFITLRNLKTHLEIHENKKFACCKCRKCFSTAFKRNQHEKLVHIKQCLRKCPMCPEAFPSYYGRTIHMQKVHNKLVGRYKCEPWPHIEITSGDEAELRGIRRIFKVAYDWKRCKPLGTISNLKKLNLSAYRKASTISIVKEYYKSRSPSVSYVNIQPCSSIVNVPCAPNPIKKMTRNLLTIDELEKQVTQRISPQLEVPCCSELCDDAEVILHRRQNRKRRYVIESGDEDENPEQQVSTRLKTDLWYEPAVRLPKLADYWSTDPLICQSFPRTVMSRNRFEILLRMVHFSNNDNQRYGDRLFKIRELVDTLNLNFKTYYYPQENLCIDESLVPFRGRIIFRQYIKLKRHKYGIKVFKLCTNTGYTNRIQIYAGKRGETETTTPTNVVMSLMEGYLEKSHTLFTDNWYTSIGLGRKLLDKETHLVGTLRENRKYLPKDVINGKIKKGEFRAKENEDGIIIKSDSSIILKDDDGTEIKLALLKNPIDLSDLKCEFENSGSKNTNLTRKFKKENTSAARDEFGDDNKPLSLEVFEKKNITNCSGSVQVKISKNAYGLKAVKRLTSVDCEISKQNALTIFEYSYVYPFIHALNKYKCFVCTKTFIEANSLREHTIKEHNVKDIRREMCNRVRDKNIKVDVTILRCKICLAICDNFSFLKSHLKDHGKNIIPDFQDNIIPFKLIDGDFKCQICQEPFFKLRLLIIHMSKHFKNYSCEICGSTFISLHLLNRHLQIHKLGNFPCDKCNKVFTNSAKRSLHYRGVHLKQFLRTCPICPERFNSNYQRSKHLRIVHHQNTATFTCATCGKEYDLKYQLLIHIRSVHMHERNHECKICHTRFFSKYCLSRHMVVHTGEKNFKCNICAKAYARLKNLRDHMKSHQDGNMCSVCELYCGDQVSLLAHVNKHHHTR

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
-
90% Identity
-
80% Identity
-