Cnem019516.1
Basic Information
- Insect
- Calephelis nemesis
- Gene Symbol
- Zbtb41
- Assembly
- GCA_002245505.1
- Location
- NJDD01001493.1:18682-35216[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 13 1.7e-06 0.00014 22.7 1.9 1 23 18 40 18 40 0.98 2 13 0.002 0.17 13.0 4.1 1 23 46 69 46 69 0.97 3 13 2.8e-05 0.0024 18.9 2.3 2 23 76 97 76 97 0.97 4 13 7.7e-06 0.00065 20.6 0.5 1 23 103 125 103 125 0.97 5 13 0.00036 0.03 15.4 3.5 1 23 131 153 131 153 0.97 6 13 5.9e-05 0.0049 17.8 0.8 3 23 162 183 160 183 0.92 7 13 8.2e-06 0.00069 20.5 1.1 2 23 192 214 191 214 0.95 8 13 0.0001 0.0085 17.1 1.3 2 23 221 242 218 242 0.90 9 13 3.7e-05 0.0031 18.5 1.6 1 23 248 272 248 272 0.96 10 13 0.0002 0.017 16.2 4.9 3 23 280 300 278 300 0.97 11 13 0.00092 0.077 14.1 0.3 2 23 308 330 307 330 0.96 12 13 0.00074 0.062 14.4 0.1 1 23 336 359 336 359 0.97 13 13 0.18 15 6.9 3.6 2 20 366 384 365 388 0.94
Sequence Information
- Coding Sequence
- ATGGACGAAGAGTATTCCCCCAAGAAAAGCAAGGCGAAGTTAAGTgcacattttaaatgtaaaatctgCAAGAAGAATTTTACCGAAAAGTCCGGACTCACTCAACATATACAACTACACTCAAATGATAGGCCATATGAATGTGAGATATGTCAAAATACCTTTAAGACCAAAAAGTACTTGAATTGCCATATCAAAAAAGTCCACAAGCCTGTAAAAGGGCCAGAATGTACCTATTGTGGTAAAAGATTCCATTATCAGAGTGTGTTAAACCAGCATTTACTAACACATACAGATACTAAGCCTTACAAATGTGATATTTGTGGAAGGGGGTTCAATTCTTCATACTCTTTGTCAACACATAATCTGATACATTCAGaTTCTAAGCCATACAAGTGTATATACTGCGACTACGCATGCCGCGACAGTTCCACGCTGAGGAAACATCAGGAGAGGCATCAGGGCATCATCAAACACTATGGGTGTAATAGCTGTGGGAAATCTTTCAAATCTAAAAGGACCTTAAAAGATCACGTGAGCGAAGTGCACTTGGAGCTGGACATAAAGACGACACCGTGCGAGGAATGCGGGAAAATGTTCAAGTCCACGTCCGCATTGTCCCACCACAGGAATAGTGTTCACAAAAGGGCGTACCAATGTGAGTGTGACATTTGCGGAATGAAAATAACCAATCGTTACAACATGGCCTCTCATCTGAGGACGCACGTTGACCTCAGACCTTACAAGTGTAGTTATACTGGCTGTGACAAGACCTATAAAGATACGAGTTCCCTCAAGAAGCACAGCATCGTCCACTTCCCGGAGAAGCAGACGGCGTGCAAGATCTGTGGACGGCGATTCACACGTTACCACCGGTACCTGCGCCACAAGAGGACGCACTTGCCGCGGTATAAGTCTACCCCTTGTGACCTCTGCGGGATCAGATTTTATAACGAGAACTACGTGCGCGTCCATATGATGAAGAAGCACACGCCCGGCCTGCGGTACATATGTGACACATGTGGCTTCGCATCGTCAAACAAACCGGGATTAGTGATGCACATCAGGAAGGGCCATGACAGTGAAATGGACACAAAATGTAAGATATGTATGAAGACATTCAAGTTGCACAAGTATCTGAAGTCGCATTACTGGAATACTCATTTCATCAAATACAAAGTGACGCTACGTAGtaaaaaaaagaaaaagccaAAAGACCTGGCTCTAATGCCAGATGATTTTGAGGGTATTTTGAATAACATCAAAGAAGAAATCGACCTGGAGATCGAGTCCGATACAGACCAAACAGAATACTCTAAGAGTGTACTCGCTGAACAAGTAAACAAGGCAATATTCGAGAAGACCAACACCAGACGAGTGGACAGGACCTTGGAATCTCTGTTCCTGGAGCATGTGATGAAACCAAGCTCGGGCTCTGATGTTGGTATGTATCTATCATATCTTTCCACCTCTGTTTCCAACTATAAAGAAAACTCCAGGTATATGGATAGAGAATTGGGGTAA
- Protein Sequence
- MDEEYSPKKSKAKLSAHFKCKICKKNFTEKSGLTQHIQLHSNDRPYECEICQNTFKTKKYLNCHIKKVHKPVKGPECTYCGKRFHYQSVLNQHLLTHTDTKPYKCDICGRGFNSSYSLSTHNLIHSDSKPYKCIYCDYACRDSSTLRKHQERHQGIIKHYGCNSCGKSFKSKRTLKDHVSEVHLELDIKTTPCEECGKMFKSTSALSHHRNSVHKRAYQCECDICGMKITNRYNMASHLRTHVDLRPYKCSYTGCDKTYKDTSSLKKHSIVHFPEKQTACKICGRRFTRYHRYLRHKRTHLPRYKSTPCDLCGIRFYNENYVRVHMMKKHTPGLRYICDTCGFASSNKPGLVMHIRKGHDSEMDTKCKICMKTFKLHKYLKSHYWNTHFIKYKVTLRSKKKKKPKDLALMPDDFEGILNNIKEEIDLEIESDTDQTEYSKSVLAEQVNKAIFEKTNTRRVDRTLESLFLEHVMKPSSGSDVGMYLSYLSTSVSNYKENSRYMDRELG
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -