Cnem014804.1
Basic Information
- Insect
- Calephelis nemesis
- Gene Symbol
- -
- Assembly
- GCA_002245505.1
- Location
- NJDD01004831.1:84049-88767[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 24 0.0078 0.66 11.2 1.0 3 23 60 81 59 81 0.94 2 24 4.1 3.5e+02 2.6 1.3 3 23 429 451 428 451 0.85 3 24 0.031 2.6 9.3 0.6 1 22 456 477 456 477 0.95 4 24 4.7 3.9e+02 2.4 0.3 1 22 519 540 519 542 0.82 5 24 0.0033 0.27 12.4 0.4 3 21 553 571 551 572 0.94 6 24 0.71 60 5.0 0.0 3 23 581 602 579 602 0.88 7 24 0.012 1 10.6 0.2 3 23 622 643 620 643 0.96 8 24 0.00048 0.04 15.0 2.4 1 23 649 672 649 672 0.96 9 24 0.087 7.3 7.9 0.0 1 23 697 720 697 720 0.90 10 24 0.013 1.1 10.5 3.4 1 23 725 747 725 747 0.97 11 24 0.012 1 10.6 0.2 1 23 753 776 753 776 0.95 12 24 0.0016 0.14 13.3 1.3 1 23 792 814 792 814 0.97 13 24 0.00012 0.01 16.8 1.8 1 23 865 888 865 888 0.97 14 24 0.0012 0.097 13.8 1.6 1 23 960 983 960 983 0.96 15 24 0.0014 0.12 13.5 1.5 2 23 1008 1030 1007 1030 0.95 16 24 0.06 5.1 8.4 0.1 2 23 1036 1058 1035 1058 0.93 17 24 0.0027 0.23 12.6 0.1 1 21 1101 1121 1101 1122 0.95 18 24 0.00086 0.072 14.2 0.6 1 23 1132 1154 1132 1154 0.93 19 24 0.00019 0.016 16.3 0.4 2 23 1244 1266 1244 1266 0.93 20 24 1.2e-07 1e-05 26.3 1.1 3 23 1273 1293 1272 1293 0.98 21 24 0.0004 0.034 15.2 0.0 3 23 1312 1332 1311 1332 0.96 22 24 0.084 7 7.9 0.0 1 23 1354 1376 1354 1376 0.97 23 24 0.0057 0.48 11.6 0.4 1 23 1382 1405 1382 1405 0.95 24 24 5.8e-06 0.00049 21.0 0.9 1 23 1413 1436 1413 1436 0.96
Sequence Information
- Coding Sequence
- ATGGAGAATGGAAATGACTCGGAAAAAGACGAGGAAGATGAAGAGGAGGAAGAAGATATGAATGATGATTCTTATGCTGATGTACCGAACATGCCTGAGGTTTCAATTACAGTAATGCGTCCCACTGGTGAGACTTTAGCTGCTCGGCAAGGTATTCAGCAACTTGCATCTAAGGATTGTCTAGTATGTGGGCGAACTTACAGGTATTCACATAATGCTCGACGTCACGAGTTATCAGCGCATAACTTTGATAGATATACTAATAAGACTCTTCCTAAAAAACAACAATCCCACATGCAACCTAAACTGCGGCCTAATCCTTTTAATCCTAAGGCACGTCTAATGCCTAATCCTATAAGTCATAAAATGCAGTTTCTTCCAAAACCTCCGTCTAATAAGATTATACCTCAAAAAATCATTGCTTGCCCTAAACCAATACCTATTAGAAATTCAAAACCTCCTAATAGTTTGCCTTATCCTCTACGTATCAAAGCCCTTAAAGacttacaaataaagaaaaaagaaccACAAATTCTTAAAACTTTGTTAACTTCAAAACCAGAGGTTTTAGTTTCTGAGCCAGAAATTCTTAATTCAGGACCTGAAAGTCCAGAAACATTGATATCAGAACCCGAAATTGCATCATTTCAAGTTGAAGCTATTTTATCAGAACCAGATGGTTATGGTCAGCAACAAGATGACGATGGTGATAACACTCATAATAACCAAAGTCAAAATTATGATACAGTTGATATGGATTCTGAGCATGAGATAGAAATCGCACGTCAAAAAGATACCGATAATGAGAATGCTGAGCTTGACCCGGAACATGAAAACGGTGATGATGATACAGCTAAAGATGAACTTgataatgaaaatgataatCAAGACGACGAAAAGGACAACTTAGAAGAAATTAATGATAATGTATCCGAGCTCAAAGAAAGTTTTAAGGACGAAAATAAAGAGGCTGATGATGGCGATGCACAAGGTGCTGAAGATCAAAACCATGAAGAAAGctatgatgattatgatgacgAAGATATGCCAATGGGCCTTGCTCCAGTTGTAGAAATTAATGAAGAAATTCAAGCAAACTCGTTGAAAAATGAGAATGAGAATGAGGATGAAgacgattttgatgaatctgGTAATGTTAATGACACTGCCGATGGAGAAGAAGTCGAGAAAGCCCTAGATCCTAATAAATTATACGTTACGAAAACACAAAAAGAATTCATTACTAAACACCGTGATATAATCGAACAAATTAATACTAAACAATGTCTTTGTTGTAACAAAGAATACCCCAGAAGAAAAGCCGTTATTCAGCATTTACAGAAAAATGGACACAAAGTTCCTAAGCATACTTGTTACAATTGTGTAGTAACTTTCAGCCATATTGGCGCTTTATTGAGTCACATGCGGTCCAATACATGCACAGATCTTTGGAAAATAATCTATAATGAGAATGGAATTCCAGATGATCAAGTTCTAGAAGATGAACCTAAGGATCCGGTGGTAAAGTACAAAGATATTTTCAATGCTAGATCCTATGCTTGTAAATTATGTCCTGCGAAATTCCAGTTGAAGCAGTTCATCATGAAACATGTTTTAGATGTGCATGAAGATGGTCAGTCACTAGTATCACTTGCATGTGTTCATTGTGGATCAAGATTTAAAGACAAAGGTATGTGGAAGAAACATATTCGCAATGGAGAGTGCACGGTATACATTGCTTGCGATTTGTGCCCAGAAAAATTCATTACAATGCAAGATTTTAGTGACCATGCATTAGCAGTACATGCCGGGAGCTTTGATCCTGATAATCAAAACAAGTGTGTTGATGGAAGGCCTACAGATTGTCCTTTATGTGGAAAGAAGAATAGCAGCTATCcaaatttagtaaaacatttaaaaataattcacaatGAGGACAACCCTCACTATTGTAAGCACTGTGAAGCCAAATTTGAGCAAGCTGCTGAccttaataaacatatttatactgAACATTCTGATAGATCTTTAATGTATTCTAGTGACCTAGATATGTCATTAGTGAAGGAGGAAGCTGAAGAATATCATTATTCTTGTACTGAATGTAATGCTATATTTGAAACGGTTGATGCTTGGACTGATCATCAAGTAGCTGAACACAACCAAATTGCTCATCACTGCGATCAGTGTGAAAAGAAATTCTTAAGGCCTTCAGAATTAGCTGaacataaaaatactcatttacgAGTTAAATTTTATCCATGCAGCGTTTGTTCAAACTCTTACAGTACACCCCAAAAGTTATCAGACCATGTCCAGCAAGCTCACCCAGGAGCCGGTAACTATGTTGCTGCTGCATCTGCAGAAACTGAATTTTTCTGCGACATATGTATACGATCATTTAAAAGCCGCCAAGCTTATTCTAATCATATGCGCATACATGCTAAAATTCCTACAACAAATCGAAGACCAGGAGATCTTAAAGGAGGATTTGCTCCTCAAATCATAGGAAAACCTATTAAACAATTTCCTTTGCAAGTGCAACCTGGTTTTAGTCCATTCAAACCAAACTGTAATGTACCTAATGCTCCTTACTCATGTGATATATGTGGAAAAGGTTTCATgcataaaaagaatatttggaagcATAAAAAAGTACTTCACGCAGACCTTGTCAATGAAAGAAATGATAGTGAAGAAAATACAATGCACGCCTCCACTGAAGAAGATGAATATAATGTTGATGAAAATGGAGTAATGTTGACAACACCTCAGTTTAATAgcttcaattttacaaatatcacAAACAGCATGCCACAAGCACCACAACTGCCACAGCCAGTCCAGCCACCTCCACAAGAAGTTGTTCAACAACAATTTTCGTGTGATCTGTGTTCCAAACGATTTCCTCTTAAAACAAGCTTATGGAAGCACAAGCGTGCAAAACATGGTATTATCAATGCAAGTTCCATTGGCACTCACGATACTCCTCCTACAGTAAGTGAAGCAGGAAGCAGATCGAGTTGTACCATATGCAAGATAACATTTGCTGATAAGAAATCGTATTATCGCCACAGAAAGAATGTACATAAGTCTTCTGTGCAAATGTGTAAAATATGTGGCAAACCCTTAAATTCTACATTAGAATTGTATGAACATCTTAAAGCAGCACATGCACGAGAACTGCTAGGATACAATGCAAACCAAAGTTCTAGCAAAACCCAAGAGTTTATAAAAGAAGATCCAGACTATGAAGGAGATCAAGATTCTGCTGATCCTAGTATTGAATATCAAGCCCATTACCCTTGTGATATTTGTGGAAAGCAATTTGTGGGTTTACTAGCATTACAAAATCATCAGTGTATAAATCAAATTCAATCATCATCACAAACATTTGATTGTGAGATATGCCACAAAAGTTATACGTCAATTGCTGCGCTTAAGAGCCACCGTGGATGGCATTTACGCTCGCCTGATGGCAAAGCTGCTGCAAACAATTCTGGATTGTGGATGCCTCAGAATAAAGTTACTAATAAAGTCAGTAAATACGAGGTAGTTGACGCATCGCAACTAGCTAAAGTGACACATACAACTCCAGCTTCTATAGTCAAACGTAAATTACCACCGGAAGTTGAAGTGACTGTTGtaaatccaaacaaaaaaatgcgcTCGGATGATTCCGTTGAAATGGAACAACATAGTCAGATGTCTGGTGGAATGGAAGATAGATATTGTAATTTATGCGATAAGGAATTCACTAAGCGCGCAGCATATCAACGTCATATGGATGAAGTACATCAACCAAATTCCGTATTTTGTCCAGTTTGCGACAAGAGCTTTACAAGAAAGtccacacttatagttcatatGAAAAAGCATTACGAAAATGAGGAAGGCAACCCTGGTACCTCTATGGATGAGCATGTCCCTCCTTGTGATATTTGTGGAGAACAATTTGACAATGCTCAAGATTTAGAAAATCATAGGGCAATGCACGACGGAGAAGAATCCGCTGAATCCGAAGACGATGGAGGGATTCCTGTTCAACAGCCTGGCGAATTTACATGTGGTCAGTGTGGTGATGGTGTAGCCACACCTCGGGATTTAATAGCTCATCGCACCATGCATTCCACGCCTACAAAGTACTTCTGTAACATTTGTAAGGTCTACTTTGCCCGTGCTATTGATTTATCCACTCACACTCGGGCGAGACACTCTGAAAGCGACAAATTATTTTTCCCATGTGCGATGTGTGACCGGTTTTTCACAAACAAAAAGAGTTTACAAAGGCACATTGAAATGTCACACTGA
- Protein Sequence
- MENGNDSEKDEEDEEEEEDMNDDSYADVPNMPEVSITVMRPTGETLAARQGIQQLASKDCLVCGRTYRYSHNARRHELSAHNFDRYTNKTLPKKQQSHMQPKLRPNPFNPKARLMPNPISHKMQFLPKPPSNKIIPQKIIACPKPIPIRNSKPPNSLPYPLRIKALKDLQIKKKEPQILKTLLTSKPEVLVSEPEILNSGPESPETLISEPEIASFQVEAILSEPDGYGQQQDDDGDNTHNNQSQNYDTVDMDSEHEIEIARQKDTDNENAELDPEHENGDDDTAKDELDNENDNQDDEKDNLEEINDNVSELKESFKDENKEADDGDAQGAEDQNHEESYDDYDDEDMPMGLAPVVEINEEIQANSLKNENENEDEDDFDESGNVNDTADGEEVEKALDPNKLYVTKTQKEFITKHRDIIEQINTKQCLCCNKEYPRRKAVIQHLQKNGHKVPKHTCYNCVVTFSHIGALLSHMRSNTCTDLWKIIYNENGIPDDQVLEDEPKDPVVKYKDIFNARSYACKLCPAKFQLKQFIMKHVLDVHEDGQSLVSLACVHCGSRFKDKGMWKKHIRNGECTVYIACDLCPEKFITMQDFSDHALAVHAGSFDPDNQNKCVDGRPTDCPLCGKKNSSYPNLVKHLKIIHNEDNPHYCKHCEAKFEQAADLNKHIYTEHSDRSLMYSSDLDMSLVKEEAEEYHYSCTECNAIFETVDAWTDHQVAEHNQIAHHCDQCEKKFLRPSELAEHKNTHLRVKFYPCSVCSNSYSTPQKLSDHVQQAHPGAGNYVAAASAETEFFCDICIRSFKSRQAYSNHMRIHAKIPTTNRRPGDLKGGFAPQIIGKPIKQFPLQVQPGFSPFKPNCNVPNAPYSCDICGKGFMHKKNIWKHKKVLHADLVNERNDSEENTMHASTEEDEYNVDENGVMLTTPQFNSFNFTNITNSMPQAPQLPQPVQPPPQEVVQQQFSCDLCSKRFPLKTSLWKHKRAKHGIINASSIGTHDTPPTVSEAGSRSSCTICKITFADKKSYYRHRKNVHKSSVQMCKICGKPLNSTLELYEHLKAAHARELLGYNANQSSSKTQEFIKEDPDYEGDQDSADPSIEYQAHYPCDICGKQFVGLLALQNHQCINQIQSSSQTFDCEICHKSYTSIAALKSHRGWHLRSPDGKAAANNSGLWMPQNKVTNKVSKYEVVDASQLAKVTHTTPASIVKRKLPPEVEVTVVNPNKKMRSDDSVEMEQHSQMSGGMEDRYCNLCDKEFTKRAAYQRHMDEVHQPNSVFCPVCDKSFTRKSTLIVHMKKHYENEEGNPGTSMDEHVPPCDICGEQFDNAQDLENHRAMHDGEESAESEDDGGIPVQQPGEFTCGQCGDGVATPRDLIAHRTMHSTPTKYFCNICKVYFARAIDLSTHTRARHSESDKLFFPCAMCDRFFTNKKSLQRHIEMSH
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -