Cnem001212.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Calephelis nemesis
Gene Symbol
-
Assembly
GCA_002245505.1
Location
NJDD01004356.1:40702-45482[+]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 38 0.00019 0.016 16.3 1.3 1 23 64 87 64 87 0.93
2 38 0.45 38 5.6 0.4 2 23 115 137 114 137 0.94
3 38 4.4 3.7e+02 2.5 0.2 1 20 159 178 159 182 0.84
4 38 3.7e-05 0.0031 18.5 1.4 3 23 189 209 188 210 0.94
5 38 0.00061 0.051 14.7 1.6 1 23 216 239 216 239 0.95
6 38 0.0021 0.17 13.0 0.3 2 23 245 267 244 267 0.94
7 38 0.0014 0.12 13.5 0.7 1 23 312 334 312 334 0.93
8 38 4.4 3.7e+02 2.5 0.2 2 23 362 384 361 384 0.90
9 38 0.017 1.4 10.1 2.1 2 23 405 427 404 427 0.96
10 38 0.0014 0.12 13.5 1.7 2 23 433 455 432 455 0.96
11 38 0.0053 0.45 11.7 5.3 1 23 459 481 459 481 0.97
12 38 0.025 2.1 9.6 3.5 3 23 485 506 484 506 0.97
13 38 1.6 1.3e+02 3.9 0.2 2 21 513 532 512 533 0.92
14 38 0.00016 0.014 16.5 4.1 1 23 579 602 579 602 0.98
15 38 2.7 2.2e+02 3.2 0.9 2 23 630 652 629 652 0.92
16 38 0.34 28 6.0 1.2 1 23 674 697 674 697 0.94
17 38 0.0001 0.0086 17.1 1.0 3 23 704 725 703 725 0.96
18 38 3.5e-05 0.0029 18.6 1.4 1 23 730 753 730 753 0.93
19 38 0.00012 0.01 16.9 0.5 1 23 758 781 758 781 0.96
20 38 0.00011 0.0089 17.1 2.8 1 23 785 808 785 808 0.97
21 38 0.039 3.3 9.0 1.2 2 23 815 836 815 836 0.96
22 38 0.74 62 5.0 0.8 1 10 842 851 842 855 0.96
23 38 0.0042 0.35 12.0 3.2 1 23 893 915 893 915 0.97
24 38 1.3 1.1e+02 4.2 0.0 2 23 939 961 938 961 0.92
25 38 0.00011 0.0091 17.0 0.2 2 23 982 1004 981 1004 0.96
26 38 0.00099 0.083 14.0 0.2 2 23 1010 1032 1009 1032 0.91
27 38 0.0013 0.11 13.6 1.3 1 23 1036 1059 1036 1059 0.95
28 38 0.12 9.8 7.5 4.3 2 23 1062 1084 1062 1084 0.96
29 38 0.13 11 7.3 2.8 2 23 1090 1112 1090 1112 0.96
30 38 0.0036 0.3 12.2 1.0 1 23 1160 1183 1160 1183 0.95
31 38 1.4 1.2e+02 4.1 0.1 2 23 1211 1233 1210 1233 0.94
32 38 0.73 61 5.0 0.1 2 23 1256 1278 1255 1278 0.95
33 38 2.4e-05 0.002 19.1 0.3 3 23 1285 1306 1284 1306 0.94
34 38 0.14 12 7.2 3.5 2 23 1311 1333 1310 1333 0.95
35 38 0.00097 0.081 14.0 2.7 1 23 1338 1361 1338 1361 0.97
36 38 8.2e-06 0.00069 20.5 5.0 1 23 1365 1388 1365 1388 0.97
37 38 0.0005 0.042 14.9 0.3 2 23 1395 1416 1394 1416 0.96
38 38 1.1e-05 0.00096 20.1 0.4 1 23 1422 1444 1422 1444 0.98

Sequence Information

Coding Sequence
ATGATAGGCTTTCTTCGACACTCTGCTACGTGTACAATAAACAAAGATGGTGTTAAAATTTGCGGACAAGAAACTATAGTCGTTAGTGACGAAACTGGAAAACAACCCGTTGTTGTTCAAATACGAAATAATTTagcatgtattttaaatatgtcaacGGCTAtacctttcaaatattttatgaataaatttagaTGCTTTTACTGTTCAAAAGACTTTACTGATTCTACAGATCTAAGGCAACACACTGTTGTAGAACATCCTATCtgtgatataaatttaaaatgtatgaaactTAGAAATAGGCAAGAAAGTTGTATCAAACTTGATACATCTAAACTATCATGTAAAATGTGTTTCGAAAATATAAGTAAtcttaatactttaatagaaCATTTAACAACAAATCACAAAGCAAACTACGATAAATCTATCGATACTAATATTCaggaatttaaattaattaaagataaGTATCCATGTCCTATGTGTGACGATGTACATACCTATTTTAGTACTCTACTTAGACATGTTGGAGAAGTTcacaatgataataaaaatatatgtgcgCATTGTGGAAAATCATTTAGAAACCTTCCCAACTTACGTGCCCATGTTGCAAATCATCATAAAACTACGggtaattttaaatgtgataaatgtGGTTTAGAATttacttcatttaaatatttaagcgcCCACCAAGGCAGAAAACACGATTTAAAAGTAGTCGAGTGTCAAAAGTGCcccgaaaaatttaaaaatacttatggAATGCAAAGGCATCTTATTAATGTTCACAAATCCGGTCACGAATGTCCACATTGTAATATAAAAGGAGAAAGCAAGAACAGTGCTAATTGGTATCGAAGAAAcaatttgcaaattttatttaataatacttcaATAATACCTTTTAAGTGGCGGGgaaaatatttgtgtttctATTGTGGTGAAGATTTCTCTAATTATAATGATCTGAAATCACATACGGAAGACCACGGACTTTGCGCAGAAAGAGATCGCGCTATAAGATTAGTAAAAGCAGCTGACGTTGAAGTGAAAGTAGACGTATCTGacgtaaaatgtaaattgtgtgATGAGAATTTAAATACTTTCAATGAAATAGTTATTCATTTGATAAATAAGCACAGTTTACACTATGATCAAAACGTGCAACTTCTTATAGTACCGTATCGACTTAAAGATCTGCAATGTCTCTGGTGCaaagaaaagtttaaatatttaaatcacttAGTTAGTCATGTTAACAAAAGCCATCCCAGCGATTGTGTTGAATGCTATAAATGTAATcggaaatttaataaaaagagagATTTAGATGCGCATGTTAGAAGAAGACACAAAACAGAATATAAATGTCACGAttgtagtttaatttttaaaacttacacGGATCTTTTACATCACAAGGATTCACATGTTTCTTTTtgcagcatttgttttaaaacttttcgaTCTTTGAAGAAAAGATTACAACATATGAAACGTGATCATGCTGATATTGACAATTTGATATGCGGTTTTTGCAATAAATTGTTGAATACCAAACAAGCTTATCTGCGTCATATCACTAAGTGCAATGTACTAGACTTTGACAgtaaacatttagttaacagCGAAGTTGCAAAACCTTCAGTGAAACAAATACGAAACAACATAGCGTGTATTTTGAACGCATCTACAGCTATaccattcaaatatttttccaaattcAGATGTTTTTATTGTTCTAAAGATTTTTCAGATTGTGATGATCTTAAACAACATACAATGACTGAACATCCATTTTGTGATACGAAAATTCGTTCTTTAAGACTTAAAAATAGGCAAGATAGTGGTATCAAAATAGATATTTCTTCGCTGTCTtgcaagatttgttttaatttgttttatgatttagAAACATTAGTAGAACACTTGATACATAAACACAAGCTAGATTATGATAAAACAGTTGAAATTGATCTACAAtgctataaattaataaaagatcaTTTCCCCTGTCCGTATTGTGGAGAGATGCATCGTTATTTTAAATCAGTACTAACCCATATAAATAAACTTCATAGTGACGGTAAAAATATGTGTTCGTATTGTGGATTATCATTTAAGTCATTTCCTAATTTACGAAGTCATATTAGTCGTAGACACAAAATTGGTAGTTTCAAATGTAATTTGTGCCATTTAATCTTTACAACAAATAGTTATTTGCAAGTCCATATGGGCCAGGCCCATGGATCGAAATGTTTTCAATGTTTAGACTGCCCTGAGAAGTTTACTTCGGCTTACAAGATGCAAAGACATCAAATAAATGCTCATAACACTGGACATAAGTGTGAATACTGCGGAAAACTTTTTACTAGGAATTCATTTATGGTAAACCACGTAAGACGAATTCATTTAAAAGAGAAAAACGCAGAGTGCTTAGTATGTCATTTAAAGTTTTTCGATGAGCAAATGCTAAGGATTCATATGGTCAAACATTATGGTGCTAGAAATTTTGAATGTGATGTGTGTGGGAAAAAATTTCTTTGGAAGAAAAATTTGAGAGATGAAAACCAGCAAAGCGGTTGTGCCTCTAAGCAGAGaccagaaaatttgaaaattcttttcaACAACACAAGTTTATGGCCATTTAAGTGGCATGgaaaattttcttgtttttactgCGATAAATATTATGACGAATATTCAGATCTTAAGAAACATTCTAAATCTCATGGCCTATGCACAACAGAAGATTATGAGACAGGGAAAGATACGGAAATTAAATTAGACATTTCTGAGATTTCATGTGAAATTTGCACTGAACCATTTGAAATGTATGACGAAATTGTCgatcatttaattattaaacatgaTTTAGCATACGATAAATCGATCGAAATATCATTCCAAGAATTTAGGTTAAGAGATTTAAATTGTCAATTTTGCGGAGAGTCTTTTGCAAATTTTGCCGATCTTTTCAATCATATAAATACCGTTCATTCGCGATGCACCTGCGTATGTGATGATTGTGGAATAGTTTACGATACGAAGAAAGGTTTGGCTAAACATCTGATCGATTTACATCGAAGTGACCATCCTTGTGAAGAATGTAATACAGTGTTTGAATCGAAAATTTTGCTTCgggttcataaaaaaaactttcattttcGGAAGTGTAAATCATGTGAATTACATTTCGATTCATTTAGTTTGTTAAAGAAACACGTGAAATACAAACACCCAGACAACACTCGTAAATGTCCTCAATGTTCAAAACAGTTTCTTACATTACAAGGTCTCAAACGACATGTTGATACATGccacttttttaaagttaccaGCGATACGCTTTTAGAAGAAAACTTCGTCGCACCTAAAAAGAAACAGAATGTCGTTCAAATACGGCAAAACATTCAATGTATTCTTAACATGTCTAACGCAGTaccattccaatttttttctaagttttcttgtttttattgttCCAAAAAGTTCGTTGAGTTTGAAGAGCTCAAAGCTCACACGACTGTAGAACACCCTGTGTGTGATTTAAATTCGAAATGTATGAAAAGGTGTAAGGGGGAGAGAATTACTGTGAAAATTGATATATCTTCATTGTCATGTAAGTTATGCTCTCTTTTTATTGACAACTTAGACAGTCTCATTGACCATTTAATATCAAAGCATGATGCTAAGTATGATAAAGAGATTACTGGGTGTTTGCAaccttttaaaatagttaaagatAATATTCCATGTCCATCTTGTACAAATGTTTTTCGATATTTCGGTATTTTATTACGGCATATCAACTCagaacacaataataataataaaatttgcgaTTTCTGCGGTCGCAGCTTTAGGAACGTTTCAAATCTTAAAGTCCATATCGCGTACACTCATACAGGCTCGAGTGAATGTGAAATATGTGGGTCTAAATACAAAAACCAATGGTGCTTAGGAAGGCATAGGGCTAAGTGTCACAATGCTAAGGACTACAAATGTCCGAAATGCCCCGAACAATTTCAGTCTCAATATCACAAACAAAAGCATCTTATAAAAGCACATGACATAGGACATAAATGTTCGTACTGTGGAAAAATGTTTACGAGGAATTCATTCATGAAAGACCATATTCGAAGGACGCATTTAAAGGAAAAGAACGTACCGTGTTCGGTTTGTAATGAGAGGTtctttgataattatttattgaaactgCATATGGTGAAACATGAAGGGGAGAGAAAATTCAGTTGTGACGTATGTGGTAAAGCCTTCTTAAGGAGGAGTAATTTGAGTTCACACATGGAAATGCATAAAAAGTATGGGCATATCACATCAGTAATGTAA
Protein Sequence
MIGFLRHSATCTINKDGVKICGQETIVVSDETGKQPVVVQIRNNLACILNMSTAIPFKYFMNKFRCFYCSKDFTDSTDLRQHTVVEHPICDINLKCMKLRNRQESCIKLDTSKLSCKMCFENISNLNTLIEHLTTNHKANYDKSIDTNIQEFKLIKDKYPCPMCDDVHTYFSTLLRHVGEVHNDNKNICAHCGKSFRNLPNLRAHVANHHKTTGNFKCDKCGLEFTSFKYLSAHQGRKHDLKVVECQKCPEKFKNTYGMQRHLINVHKSGHECPHCNIKGESKNSANWYRRNNLQILFNNTSIIPFKWRGKYLCFYCGEDFSNYNDLKSHTEDHGLCAERDRAIRLVKAADVEVKVDVSDVKCKLCDENLNTFNEIVIHLINKHSLHYDQNVQLLIVPYRLKDLQCLWCKEKFKYLNHLVSHVNKSHPSDCVECYKCNRKFNKKRDLDAHVRRRHKTEYKCHDCSLIFKTYTDLLHHKDSHVSFCSICFKTFRSLKKRLQHMKRDHADIDNLICGFCNKLLNTKQAYLRHITKCNVLDFDSKHLVNSEVAKPSVKQIRNNIACILNASTAIPFKYFSKFRCFYCSKDFSDCDDLKQHTMTEHPFCDTKIRSLRLKNRQDSGIKIDISSLSCKICFNLFYDLETLVEHLIHKHKLDYDKTVEIDLQCYKLIKDHFPCPYCGEMHRYFKSVLTHINKLHSDGKNMCSYCGLSFKSFPNLRSHISRRHKIGSFKCNLCHLIFTTNSYLQVHMGQAHGSKCFQCLDCPEKFTSAYKMQRHQINAHNTGHKCEYCGKLFTRNSFMVNHVRRIHLKEKNAECLVCHLKFFDEQMLRIHMVKHYGARNFECDVCGKKFLWKKNLRDENQQSGCASKQRPENLKILFNNTSLWPFKWHGKFSCFYCDKYYDEYSDLKKHSKSHGLCTTEDYETGKDTEIKLDISEISCEICTEPFEMYDEIVDHLIIKHDLAYDKSIEISFQEFRLRDLNCQFCGESFANFADLFNHINTVHSRCTCVCDDCGIVYDTKKGLAKHLIDLHRSDHPCEECNTVFESKILLRVHKKNFHFRKCKSCELHFDSFSLLKKHVKYKHPDNTRKCPQCSKQFLTLQGLKRHVDTCHFFKVTSDTLLEENFVAPKKKQNVVQIRQNIQCILNMSNAVPFQFFSKFSCFYCSKKFVEFEELKAHTTVEHPVCDLNSKCMKRCKGERITVKIDISSLSCKLCSLFIDNLDSLIDHLISKHDAKYDKEITGCLQPFKIVKDNIPCPSCTNVFRYFGILLRHINSEHNNNNKICDFCGRSFRNVSNLKVHIAYTHTGSSECEICGSKYKNQWCLGRHRAKCHNAKDYKCPKCPEQFQSQYHKQKHLIKAHDIGHKCSYCGKMFTRNSFMKDHIRRTHLKEKNVPCSVCNERFFDNYLLKLHMVKHEGERKFSCDVCGKAFLRRSNLSSHMEMHKKYGHITSVM

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
-
90% Identity
-
80% Identity
-