Cnem025373.1
Basic Information
- Insect
- Calephelis nemesis
- Gene Symbol
- -
- Assembly
- GCA_002245505.1
- Location
- NJDD01008661.1:1928-8583[-]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 1 3.6e-07 8.4e-05 22.8 0.0 1 42 48 90 48 93 0.89
Sequence Information
- Coding Sequence
- ATGGAAGCCGAGTATGTGGACATCAAGTACGAATATGATGCTGACACAAACTTGACAGatcCTCAACCAGAACAAAAACCAAAAGTCAAACTAAAGTCTGAGCACAAGTCAAAGAAAGACTCAAGTATGATGTTCAATTACACAGATGAGGAGTTGAACAAATGTATTGAAGAAGTTCTGAATAAGACCATGTCACAAGCCAAAGCATCTTTCATGTACAATGTGCCGGTGAAGGTGATAAAGAAAGAACTGAATAggCGAcgagaaaagaaagaaaagaagccGCGTGTTAAAGTAAAAGGAAAAGAATTGGAAAAACAGATACATAATGTGcgcataatatttaataatacaaacgcTACACCAATAAGAAGTCGAAACGATATAGGTTATGGTTGCTGTTTCTGCGACGTTGCTTTCCCAGACCCTGCAGATTTAAAAAGTCACACATTAACTCTCCACAATGAAGAAGCTAAAAGTAAATTTGCAAAAGGGAAACGTCTGTGGGAGTTCCTTGTGAAACTTGATATAACTGGTTTACGATGTGAGATTtgcaaagaaaaattaaatagtgtAGATGACATGCTGGATCATTTGGAATCACATcattttgtaatacatagagatataaataatcatattttaccATTTAAATTTGAAGGTGAAGAATTAAGATGTGTATTATGCGAAGtagcttttaataaatataaaggtcTCCTAGAACATATGAGTAAACATTACAGAAATTATATATGCGATGTCTGCGATCAAGGATTTGTTACAAAAGCGATAATGGTATTACATAAGGAAGGACATAAAACTGGTGCTTTCGCATGCTCGTTTTGTTCAAAAGTTTGTGATacattaagaaaaaagaaatccCACGAACGGACAGTGCATATTCATTCACAATTAATTAGCAAATGCGGTTTGTGCGGTGAAAAGTTTAGTACATATAGAAAGAAACAGAAACATATGAATAGTGTACACGGTGTAAATATTAAAGAAGTGAAGTGTCAAGCTTGTGAACGGTGTTTTGCTACTCAAAGTGCTTTGCGCATACATACAAAACGTGACCATTTGATGGAAAGACGTTTTTGTTGTAAGTTTTGTGATATGCGATTTTTTGCAAGTCGGGAACTCACATCTCATATGGTGAAACATACTGGGAATCGGGATTTTCAGTGTGATGTATGTATGAAGGCTTTTGGTACAAAGAAAACTCTACGAGAACATTTGAGGATACATGCGAATGATCGACGCTTTAAGTGTTTGCATTGCAGTCAATCGTTCATACAAAATTGTAGTTTAAAAGGACATCTACGATCAAAGCATGGTATAAGTTAA
- Protein Sequence
- MEAEYVDIKYEYDADTNLTDPQPEQKPKVKLKSEHKSKKDSSMMFNYTDEELNKCIEEVLNKTMSQAKASFMYNVPVKVIKKELNRRREKKEKKPRVKVKGKELEKQIHNVRIIFNNTNATPIRSRNDIGYGCCFCDVAFPDPADLKSHTLTLHNEEAKSKFAKGKRLWEFLVKLDITGLRCEICKEKLNSVDDMLDHLESHHFVIHRDINNHILPFKFEGEELRCVLCEVAFNKYKGLLEHMSKHYRNYICDVCDQGFVTKAIMVLHKEGHKTGAFACSFCSKVCDTLRKKKSHERTVHIHSQLISKCGLCGEKFSTYRKKQKHMNSVHGVNIKEVKCQACERCFATQSALRIHTKRDHLMERRFCCKFCDMRFFASRELTSHMVKHTGNRDFQCDVCMKAFGTKKTLREHLRIHANDRRFKCLHCSQSFIQNCSLKGHLRSKHGIS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00257305;
- 90% Identity
- iTF_00256856;
- 80% Identity
- iTF_00256320;