Cnem023978.1
Basic Information
- Insect
- Calephelis nemesis
- Gene Symbol
- -
- Assembly
- GCA_002245505.1
- Location
- NJDD01002182.1:201484-202779[-]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 1.7e-07 4e-05 23.9 0.0 5 36 19 50 18 55 0.93 2 2 3.5 8.3e+02 0.4 0.0 27 41 170 184 170 188 0.86
Sequence Information
- Coding Sequence
- ATGCCTCGCAACTATTCTAGAAAAACAGACCGACAGGGTTGGGATAAAATCTCTATGGAAAAGGCTATTCAAGCAGTGAAGAATAATGAAATGGGTTGGCTAATGGCTTCCAAAGTATTTAATATTCCGCAATCAACTCTTAGAAGACACGCACTTAAAAAAGTCTTAGCTACTGCTAAAGTAGTCAATGGATTTAAGAAAACTGGTCTCTGGCCTGTTGTTCCTAACATATTTCCCGATTATTTGTTCGAGCCTGCTGAAACGACGAATATTCCCATAAGGCAAGATCTCATAGAGCCCGAAGAAGATTTAACGGTAGCTACTAATCTATGCACACTCTCATCAGGTCCGTCTCAAGAATCCGAGGTAGAAGGAAACAGTGTTATATCACTTGCAACTACGTCAGCCGCAAACAATCCACGTCTAGTCTCAGCTGCTGAGGTAATAGACCCAGTCAGTGTAGAACCTATGCCCACGTCATCTTGTATACTCCAAGAGTTGAATGTCAATGTTCCCGTTAGCGTGCTATCTCGAGTACCGAAAGGAACATATGTGACTGGCCAAGGCAAAAGAAAACCACGCAAGAAACCAACAGTATTGGTATTAACTTCAACGCCAAATATGGAAGAAATTAAAGCAAAATCTGCTCCTCTGCCTCATccaaaaaaaagacaagaaaGGTTACGAAAATCGAAGCCAAAAGAGGTCTGGCTCAAATGCTTAAGCTGTAAAAAGGGGCTCATGCATCATGTGCATGATGTTCCAAAAAAGACAAAGCGTTTCACGTGTGAACTTTGTATTTAA
- Protein Sequence
- MPRNYSRKTDRQGWDKISMEKAIQAVKNNEMGWLMASKVFNIPQSTLRRHALKKVLATAKVVNGFKKTGLWPVVPNIFPDYLFEPAETTNIPIRQDLIEPEEDLTVATNLCTLSSGPSQESEVEGNSVISLATTSAANNPRLVSAAEVIDPVSVEPMPTSSCILQELNVNVPVSVLSRVPKGTYVTGQGKRKPRKKPTVLVLTSTPNMEEIKAKSAPLPHPKKRQERLRKSKPKEVWLKCLSCKKGLMHHVHDVPKKTKRFTCELCI
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -