Cnem006172.1
Basic Information
- Insect
- Calephelis nemesis
- Gene Symbol
- -
- Assembly
- GCA_002245505.1
- Location
- NJDD01001514.1:20594-21724[-]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 1 2.8e-09 6.5e-07 29.6 0.0 1 38 15 52 15 59 0.89
Sequence Information
- Coding Sequence
- ATGGTTAGAaactataaaagaaaaacaaataaatcatcctatacaaaagaaaaattacaagAAGCTGTACAAGCTGTCCGTTCAGGAACATTAAGTGGATATGCAGCTGCAAAAACATACAGCATCCCTCGTATGACTATCCTAGATCACGTCAATAACAAAAGATGTAAATCTAATACCCTAGGAAGGAGTACTGCTCTCTCGGTAGAAGTAGAACAAAAGATTGCAACATGCTTGCATTTAATGGAGAAATGTGGTTTTGGCCTCTGTCGAAAAGAAGTTTTAGAATTGGTTGGGGATTTTGTGGAACGCAATGGGATCGCGACGccgtttaaaaataacattcctGGAGAAGATTGGTTTCTTGGATTTAAACGGAGGCAAAAATTATCTGTGAAGAAACCGCAAGGGGTTGAATATGCGAGAAAAACTGCAATAGATCCCTTTATTATATATccgtattttaatttactggaaCAAACCCTCGACGAACTAAATCTAAGAGATAACCCATCCGCAATATATAACGTAGACGAAACCAGCTTTTCCAAAGATCCACAAAGTACAAAAGTAGTTGGCATAAAAGGTCACGCATCGCAAAGAGTAATTTCAACGCCAGGCAAGGAGAACACTACAGTTTTACTTGGTTGTAATGCTTTGGGtgaaaaattaccaccattaataatatttaaaggtaAAAATGTATGGGACTCCATGACCTCACCTGAAGCTTACCCAGGTACTAGATATGCTGCAACCAAGAATGGATGGATGGAGGCAGAAGTATTTAAAGCttacttcaaaaaatcttttttaccAGCAATTGGCAACCAACGAccagtattattaatatttgacgGCCATTCCACGCATgtggggttaaatttaattgaagaGGCACGGAAGGAAAATATAACCTTATTAAAACTGCCTTCACACACGAGCCATATTTTGCAACCTTTGgacatttctgtgatgaaaTCCTTTAAAAATTCTTGGGACCAATTAATGGCCAAATGGCAAAGACAAAACATAGGAATCGTTTTGCCTAAGAAAGAGTTCTCACGGCTAATAGGAAAAGTATGGATGGAAATTGACACCACAGTCTGTCGTAACGGTTACGGAACGTAA
- Protein Sequence
- MVRNYKRKTNKSSYTKEKLQEAVQAVRSGTLSGYAAAKTYSIPRMTILDHVNNKRCKSNTLGRSTALSVEVEQKIATCLHLMEKCGFGLCRKEVLELVGDFVERNGIATPFKNNIPGEDWFLGFKRRQKLSVKKPQGVEYARKTAIDPFIIYPYFNLLEQTLDELNLRDNPSAIYNVDETSFSKDPQSTKVVGIKGHASQRVISTPGKENTTVLLGCNALGEKLPPLIIFKGKNVWDSMTSPEAYPGTRYAATKNGWMEAEVFKAYFKKSFLPAIGNQRPVLLIFDGHSTHVGLNLIEEARKENITLLKLPSHTSHILQPLDISVMKSFKNSWDQLMAKWQRQNIGIVLPKKEFSRLIGKVWMEIDTTVCRNGYGT
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -