Cnem001913.1
Basic Information
- Insect
- Calephelis nemesis
- Gene Symbol
- -
- Assembly
- GCA_002245505.1
- Location
- NJDD01003758.1:29231-68532[-]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 3.4e-05 0.008 16.5 0.0 2 36 428 462 427 467 0.93 2 2 2e-05 0.0048 17.2 0.0 2 37 481 516 480 520 0.94
Sequence Information
- Coding Sequence
- AtgtgctgccaggcagctctctTACAACCAGTTGAGAAGACGGTAGAGGGCGACCGATGCGTGAGCAGTAAGCGGGACAGCTGGTGTCTGGCCGCCGCCGACCGGGAGCCTTGGCTGACCAAACCCGACAACGTATCGAATGGCAATTTCTTGAAACCACgatatcaatttaaaactgtCAGAGTTTTCAACACAGCTGATTTCTTGATTGAATTTCCACGCGTATCCACAGATAAAATACCAGAggtATCGTACGTGAACAAAACTACACAAagtgcaaatttcatttttgatcCGGAAACACCCGAATGTCCAGAAGATTCCAAAATCTGCACTTTGAATATCAAAACGGGACCAGAGGAGACCTTCTGCTACGCGAACGGTACCACCGAAGAATATTATTCGCTGTACGTAGAAGTTGAGGGGATCGCTGAAAGGGCTGAGATAAAGGTTCACGTCCAATGTGCATGTGGCTGCAGCGAGAACGTTGTGAAGCGGTCGGAGCAGTGCAGCGGGAGGGGGAGCTCCCGCTGCGGGGAAGACTATTGCCTCTGCGACGAAGGATGGACCGGCTTGCGATGTCAGTGTGAACCGACCAGGGGGGATATTGGACAAGACTGCATCAACCCTTCGAAACCAGATGTTAATTGTTCCGGAAATGGTTTATGTGGAGAGTGCGGCAAGTGTGAATGTTACGATTTCGGGGAAGGCTCCAGTTACTTCGACAAGAACGCTTACTGTGAAGATATCTGTATGAAGATCAACAACAACTGTGACGACTGCCTTCTGCAGGATGGCCACTGCGGCTGCTCCAAGTTTGACCTGTCCCGCGCCCCATACAACCGGACCGCCTTGGGGGATAGAGACGGAAGGAACAGGTCCGTGTGGATAGAGTGCGACAGCTACATTAGCAACTGCACCGTAGAATATGCAGCGAAGAAAAGTGCTAATGGATCGtattattacatgattattaaaaattcttGTGATCCGATTAAAGAAGAGCAAGTCGCGGGAGCAGTAAATGTGACGCTGCCGCTGGTGGCGTGCGCGCTGGTGGGGGTGGCGGCGCTGGCGGCGGCGGCGGGGTNNCCGCACGCCGCCGCCGCCGCTGGCCGACCCCATGTACCAGAACATCGGCGCCGAGGACTGCACCGGCGAGAACCCGCTCTACAAGCCGCCGACGTCTTCCTTCAAGAACCCGACCTATGGGAAATGGTAGTTTCGATTCCTAGACAAAGTGTGCTCTCTCTACCTTCgaggaaaaaaaaaatatgggaacCTGAACAAATGAAATCAGCAATTAATGCAGTAAGGCAGAAGGTCATGGGATATAAAAAGgctctaaaaatgttttctggGCCTAAATCTACACTGAAACGGTTAATTCCTAGACAAAGTGTGCTCTCTCTACCTtcaaggaaaaaaaaaatatgggaacCTGAACAAATGAAATCAGCAATTAATGCAGTAAGGCAGAAGGTCATGGGATATAAAAAGgctctaaaaatgttttctggGCCTAAATCTACACTGAAACGGTTAGTAAACGACATTCATCCAATTCCTACGACCAAGACTAGGACTTCTAATCGTGGAAGAAAGGCAATAACAGCAAAGAATCGTGAATGTGGACGTGGACGTGGACACGGTGTCAGACGTAATCACGACGGTGAAGGATCCGGTAGGAACGTTGTTCGACGTCAGAGAGAAATTACATCCAGCATTGGCCCTGAAATTGACGAAGACGCACTGAATACCGATTCTGTCGAGTCGTTTACAAACGTGCCTCCTAAAAACACGAACGTGCCGTGTATGTACTGCGACACGATTTATTGCAATGACAGACCTGGAGAGCCATGGGTTCAGGTTCAAAGTTGCGATTTATGGGCTCATGTCGCCTGTGTAGGCTCTGAAGGTGACTATTATATTTGCGATTTTtgcgtttaa
- Protein Sequence
- MCCQAALLQPVEKTVEGDRCVSSKRDSWCLAAADREPWLTKPDNVSNGNFLKPRYQFKTVRVFNTADFLIEFPRVSTDKIPEVSYVNKTTQSANFIFDPETPECPEDSKICTLNIKTGPEETFCYANGTTEEYYSLYVEVEGIAERAEIKVHVQCACGCSENVVKRSEQCSGRGSSRCGEDYCLCDEGWTGLRCQCEPTRGDIGQDCINPSKPDVNCSGNGLCGECGKCECYDFGEGSSYFDKNAYCEDICMKINNNCDDCLLQDGHCGCSKFDLSRAPYNRTALGDRDGRNRSVWIECDSYISNCTVEYAAKKSANGSYYYMIIKNSCDPIKEEQVAGAVNVTLPLVACALVGVAALAAAAGXPHAAAAAGRPHVPEHRRRGLHRREPALQAADVFLQEPDLWEMVVSIPRQSVLSLPSRKKKIWEPEQMKSAINAVRQKVMGYKKALKMFSGPKSTLKRLIPRQSVLSLPSRKKKIWEPEQMKSAINAVRQKVMGYKKALKMFSGPKSTLKRLVNDIHPIPTTKTRTSNRGRKAITAKNRECGRGRGHGVRRNHDGEGSGRNVVRRQREITSSIGPEIDEDALNTDSVESFTNVPPKNTNVPCMYCDTIYCNDRPGEPWVQVQSCDLWAHVACVGSEGDYYICDFCV
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -