Cnem012702.1
Basic Information
- Insect
- Calephelis nemesis
- Gene Symbol
- -
- Assembly
- GCA_002245505.1
- Location
- NJDD01003445.1:656889-658657[-]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 5.7e-10 1.3e-07 31.8 0.1 2 41 56 96 55 99 0.88 2 2 3.8e-12 9e-10 38.7 0.1 1 43 157 199 157 201 0.90
Sequence Information
- Coding Sequence
- ATGTATGCTGACTTTGTGATAGTAAACCTGATAAACCATACAAAGAACGAGCATAGAGTGCTCTGCAGCAGCTCGTTCGCTTGGATTGCTGCAGATTTATCCCATTGTCATTTTAGCGTAGACGCTAGAGACAATACACCCAAAAAGAAGAGACTTAATTGGTCTGAGAATGATTTAAAAGCGGCTATGAAAGCAGTCAAAAATGGGACATTAACTCAAAGAATTGCATcaagaatatataaaattcctcGAAGTACTTTGAGAAACCACTTATACAGTGGCAAGTTAACTAAACGCGTAGGAAGATTTCGAGTATTAACAGATGAACAGGAAAAAGAgctttgttttgaaataaaaaggcTTGAAAAAGATGGGGTTCCTATTACGACATTGTGCATAAGACGACAAGCTTATTTATTCtctTATAAACGAGAAACTTTTACTTTTGACCGGGAAAGATTCAACTGGTCAGAAGATAATTTGCGTGCAGCCATGAAAGCAGTACAGGTGGATGGATCAACTATAGCAGCTGCTTCGAGAAAATACGGAATTCCACGAACAACTTTATGGAAACATGTAAAAAGTGGCAAGTCTGTTAAACATATTGGAAGATATCCTGTACTAAGTGACGAACAGGAACAGGATCTGTGTAGAGAAATAAAAGAGCTTGAGAGAAATGGTGCTCGTATCACTACATTTTTCATCAGAAAACAAGCGTATTTATACtgtaagttaaataatataccaAATACGTTCTGCCAGTCTAAGCGTACAGCAGGCATAGATTGGTTACGAGGGTTTTTACAGAGAAACCCATCAATAAAAGTTAAGAGAGGACAAGGAACAACTTCTACACAGCCGACGGAAGAAGATAAGGCAAAAAGTAGCgagatttattttgtctatactGATGAAttctaa
- Protein Sequence
- MYADFVIVNLINHTKNEHRVLCSSSFAWIAADLSHCHFSVDARDNTPKKKRLNWSENDLKAAMKAVKNGTLTQRIASRIYKIPRSTLRNHLYSGKLTKRVGRFRVLTDEQEKELCFEIKRLEKDGVPITTLCIRRQAYLFSYKRETFTFDRERFNWSEDNLRAAMKAVQVDGSTIAAASRKYGIPRTTLWKHVKSGKSVKHIGRYPVLSDEQEQDLCREIKELERNGARITTFFIRKQAYLYCKLNNIPNTFCQSKRTAGIDWLRGFLQRNPSIKVKRGQGTTSTQPTEEDKAKSSEIYFVYTDEF
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -