Cnem009976.1
Basic Information
- Insect
- Calephelis nemesis
- Gene Symbol
- -
- Assembly
- GCA_002245505.1
- Location
- NJDD01003960.1:68239-85297[+]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 4 4.1e-11 9.7e-09 35.4 0.0 4 38 146 181 143 186 0.89 2 4 1.5e-10 3.5e-08 33.6 0.1 2 39 198 235 197 238 0.92 3 4 9.7e-12 2.3e-09 37.4 0.2 2 45 253 296 252 296 0.96 4 4 3.8e-18 9e-16 57.9 0.0 1 42 303 345 303 348 0.95
Sequence Information
- Coding Sequence
- ATGCCAGGGCACGAGGTGTCCCAGGTGAAATGTGAACCGACCTCAGATGACGACGAATGTTCACAATATTCTGGCAGTCATAGTAGATACCAGAGCGAAGGAGATTCCCTGGAAGAGTTGCTGCCGGCGCCGTCTGGACCGGCGGCCACGCTCGTCCGCGAACTCCCGCTTCTGACGTCGGAGGCTTCGCTAGCTACCCTCGAACCAGCCGTTGACGGCAATGTACTTggCTCAGCACTCATCAAGCGACACGTGAAATTAATGAAAGGTGAAGAAGTGGCAGATTCGGCTGAATTTGTGACGCTCATGGCCATGAAGGGCGAACCTGTTTCAGAGGGCGAACATCATCACCAAAGCGGGGACGACTTAAGTGATTCCAGTAGTCCTCCACTAGAGGCCGTGAACCGAGGAAGTCCTAAGTCCTGGACACAGCAGGACATGGAAAACGCGCTGGAGGCTTTGAGGAACCATCAAATGAGTTTGACAAAGGCATCAGCGACATTCGGAATACCATCGACGACGCTTTGGCAGCGGGCGCACAGGCTGGGGATAAACACGCCAAAAAAAGatagtgtttccaaaacttGGAGTGAGGGAGATCTGAAGGGAGCGCTAGACGCACTACGAGCAGGCGCCATTTCTGCCAATAAAGCCAGCAAAGCTTATgGTATCCCGAGTAGCACTCTCTATAAGATAGCGCGGCGTGAGGGCATCCGGCTGGCAGCGCCCTTCAACGCGGCCCCGACGGCGTGGCGGCGCGCCGACCTCGTCCGCGCCCTCCGCGCCGTGCGCGCCGGCGCCGCCGTGCAGCGAGCGGCCGCTGCGCACGGCATACCCACCGGAACTCTGTACGGTAGGTGTAAGCGTGAAGGTATCGAGCTCTCCAGGTCGAATCCCACACCGTGGTCTGAAGACGCCATGACCGAAGCTCTGCAAGCTGTCAGGGTGGGCCAGATGTCGATCAACCAGGCAGCTATCCACTACAACTTGCCCTACTCCTCACTCTACGGTAGATTCAAGAGGTGGAAATATCAGCCCTTACAGTTTCAACAGCACCAGCCAATCCAGCAAGAGGTGTGTTATCCGGAACCGGAGAGTCAGCATCAGGAACATTTGGCCCAGCCACCATCTGAATTAGATTCGTCATTCCTTCGCACCATCAGCGCAATAGATTCTTATGGACAAACATTTTATGCGGAATGTAATGTAGAGAGCTGA
- Protein Sequence
- MPGHEVSQVKCEPTSDDDECSQYSGSHSRYQSEGDSLEELLPAPSGPAATLVRELPLLTSEASLATLEPAVDGNVLGSALIKRHVKLMKGEEVADSAEFVTLMAMKGEPVSEGEHHHQSGDDLSDSSSPPLEAVNRGSPKSWTQQDMENALEALRNHQMSLTKASATFGIPSTTLWQRAHRLGINTPKKDSVSKTWSEGDLKGALDALRAGAISANKASKAYGIPSSTLYKIARREGIRLAAPFNAAPTAWRRADLVRALRAVRAGAAVQRAAAAHGIPTGTLYGRCKREGIELSRSNPTPWSEDAMTEALQAVRVGQMSINQAAIHYNLPYSSLYGRFKRWKYQPLQFQQHQPIQQEVCYPEPESQHQEHLAQPPSELDSSFLRTISAIDSYGQTFYAECNVES
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -