Basic Information

Insect: Calameuta pygmaea
Gene Symbol: -
Assembly: GCA_031762395.1
Location: JASANN010000474.1:442310-444750[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 7 7.4e-06 0.00053 20.3 2.4 2 23 446 468 445 468 0.94

2 7 5.4e-06 0.00039 20.8 0.3 1 23 479 501 479 501 0.98

3 7 1.9e-05 0.0014 19.0 2.3 1 23 507 529 507 529 0.97

4 7 0.13 9.3 7.0 0.2 3 23 538 558 536 558 0.92

5 7 0.00023 0.016 15.6 6.4 1 23 566 588 566 588 0.97

6 7 1.9e-07 1.4e-05 25.3 0.3 1 23 594 616 594 616 0.97

7 7 4e-05 0.0029 18.0 0.4 2 23 627 649 626 649 0.95

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	7	7.4e-06	0.00053	20.3	2.4	2	23	446	468	445	468	0.94
2	7	5.4e-06	0.00039	20.8	0.3	1	23	479	501	479	501	0.98
3	7	1.9e-05	0.0014	19.0	2.3	1	23	507	529	507	529	0.97
4	7	0.13	9.3	7.0	0.2	3	23	538	558	536	558	0.92
5	7	0.00023	0.016	15.6	6.4	1	23	566	588	566	588	0.97
6	7	1.9e-07	1.4e-05	25.3	0.3	1	23	594	616	594	616	0.97
7	7	4e-05	0.0029	18.0	0.4	2	23	627	649	626	649	0.95

Sequence Information

Coding Sequence: ATGGAGGTTGAAGTGATCGAAGTGAAGGACCTGGGGGAGATATTGAACCAGGCAGAGGAGggtgaagaaataatttttgaatctgAAGCTACTGAAGATGGAGTTGATGAGGAGGTTGAAGAGATTGTGGAAATTATTGAAGAAATCGAAGAGGTTGAAGAGGATGTAGATGAGGAGGAGCAACGTGACTTAGAGAATAGCAATGGGACTGCTAATAAATCTGCAGGAAATAGTACAACAGAGATGCATGCTAAAGTGCAATCTGAAGAGTCTGGACATTACAGAAGGGTCTATAGTTCGGGCAAAGAATTTGCTAAAAAGTCTGCCCAGAAACACTTAGATAATGGAACCTCTAAGGTGGAAAAGCAGCATGTTACATACGATGTTGATGAAGATTGGGAAGATGAGGATGCTGATGAATCTGAATCGAGGCAACATAATAATGAGATGAGTCAAGTTCAACTAAAGAGCAACAAGAAAACGTACAATATTAGCAAAAAGTCTGTAAATATGCTTAATTCCGAGAACACTGGTACCTCCTCTGCTGAAGAAGTCATCATGAAGGCTGACAAATCCGGAATGCTTCTTGAATACGATCACAGTATAAATGATGCTGCTAGTGAGGAGAATAGCGGCCATGAGATAGTTAAGAATACAGAGAATAATCTGGTTTATACTGTACTAGGTTCGAAGAAGTCAGTTGGTTCTTCCAAGGgtcaagaagagaaaaattctgGTGCCAGATTTGTTAAGGTCGATCAAATAGAGGATAATACAATACCCGTTGAAGGGACCATTTACTACGAAGGGGAAGAAATGCAAACCCTGTATGTGGCACATTCTGTGAATGATAATGAACAGTATCAATACGAAGGTGTTGTAATGGAACAAGAAGGCTGGGAAACAGCAAGTCAGGAAGAAGGTAgccagcaacagcagcagcaggaggaagaaaattctcaagatcAGATTTTTCTCCACGAGGATGAAGACGGTCAGCTTTACTTTAAGGATGACACAGGAACGTTGCAGCCTGTTTACTTGACTGCCGATGGTAACTACGCAATTGCTGAGGCCAGTAGCGACGACCAGGATAGCCAAGAGAGTCAGAGTCATCAGACACAGAACTCTAGGTCATCAGACGATGGAAATTGTACAGCGGGTGACATGGAATATCGAAATAACATAGAAGATAAACAAgACTCCATCATCCCAAGTTCCTCACTCAGCGATATGGACAACGAGGACAATACCGTGACAATATCCCTAATCATTTCTGAAGATGAGCACGGCCAGAAGAGAACCCAAGTAATAATCCCCACCACGGATAATCTTAAATGTGAAATCTGTAACAAATCCTTCAAGACATCCTTCCAGTTACTACGACACAACAGACTAAAGCATGCAAGAGAGGAGGACATCACCACCAGAAACTTTCCCTGTGACCTCTGTCCTAAGAGATATCCGGATCAGAATTCCTTAGCGCGTCATCGCAAGACCCACACCGGGGATCGTCCTTTCCAGTGTCTGGAGTGCCACAAAAACTTCCCTACGTCGACGGCACTTCGCAGGCATCTTACTCTGCACAACCCTCAGTCTCGGCCGTTGCCCTGCATCTACTGCGGTCGACGCTTCCTCGAGAAGGCTAGTCTGGCTAAGCATGAGCAGTCTCACCTGGCCGGTGACCAAAGGACCCATACCTGCGACATCTGCCACAAGTCCTTCATGCACGCGAGCGATCTGAATCTTCATAAGAAGAATCATGACCCGGACAAGAAGTTCGACTGCGAGGTGTGTGGTCGGGAGTTTAATCGGTTGAACAATTTGCAGCGGCACATGATGGTGCACCAGCAACAAGGAGCCAATGAGGAGATACTCTCTTGCGACGTTTGCGGCATAACCTACAAATTCATGAGTTCTCTCACGAGACATATGGTCACCACCCACATGAACCCAGAAAAGCTGCGCCAGCAAGCCGAGGAGCAACGTCGCAAGCGTGAGAACAACTACAGACGTTACCTGGAAAACAGGAAGATGTACGAGACTCAGCACTCTGGGAGTTACGGGACCAAGAGGGGCTATCATCATAACTCCAGGGTCTTGAATGACGACGATGATATTGCTTGA
Protein Sequence: MEVEVIEVKDLGEILNQAEEGEEIIFESEATEDGVDEEVEEIVEIIEEIEEVEEDVDEEEQRDLENSNGTANKSAGNSTTEMHAKVQSEESGHYRRVYSSGKEFAKKSAQKHLDNGTSKVEKQHVTYDVDEDWEDEDADESESRQHNNEMSQVQLKSNKKTYNISKKSVNMLNSENTGTSSAEEVIMKADKSGMLLEYDHSINDAASEENSGHEIVKNTENNLVYTVLGSKKSVGSSKGQEEKNSGARFVKVDQIEDNTIPVEGTIYYEGEEMQTLYVAHSVNDNEQYQYEGVVMEQEGWETASQEEGSQQQQQQEEENSQDQIFLHEDEDGQLYFKDDTGTLQPVYLTADGNYAIAEASSDDQDSQESQSHQTQNSRSSDDGNCTAGDMEYRNNIEDKQDSIIPSSSLSDMDNEDNTVTISLIISEDEHGQKRTQVIIPTTDNLKCEICNKSFKTSFQLLRHNRLKHAREEDITTRNFPCDLCPKRYPDQNSLARHRKTHTGDRPFQCLECHKNFPTSTALRRHLTLHNPQSRPLPCIYCGRRFLEKASLAKHEQSHLAGDQRTHTCDICHKSFMHASDLNLHKKNHDPDKKFDCEVCGREFNRLNNLQRHMMVHQQQGANEEILSCDVCGITYKFMSSLTRHMVTTHMNPEKLRQQAEEQRRKRENNYRRYLENRKMYETQHSGSYGTKRGYHHNSRVLNDDDDIA

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_01474953;
90% Identity: iTF_01474953;
80% Identity: iTF_00253071;