Cpyg010491.1
Basic Information
- Insect
- Calameuta pygmaea
- Gene Symbol
- -
- Assembly
- GCA_031762395.1
- Location
- JASANN010000475.1:1280883-1284192[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 16 0.0025 0.18 12.4 0.0 2 20 413 431 412 433 0.92 2 16 0.00078 0.056 14.0 1.5 1 23 441 463 441 463 0.95 3 16 0.032 2.3 8.9 4.8 2 23 475 497 475 497 0.97 4 16 2.3e-05 0.0016 18.8 0.1 1 23 503 525 503 525 0.98 5 16 8.6e-06 0.00061 20.1 2.8 1 23 531 553 531 553 0.95 6 16 0.00016 0.011 16.2 2.7 1 23 562 584 562 584 0.97 7 16 0.00023 0.016 15.6 0.7 3 23 592 612 590 612 0.97 8 16 1e-05 0.00071 19.9 0.6 1 23 617 639 617 639 0.97 9 16 0.016 1.1 9.9 5.6 1 23 646 668 646 668 0.98 10 16 0.25 18 6.1 0.2 2 23 688 709 687 709 0.93 11 16 0.00011 0.0076 16.7 0.4 2 23 717 739 716 739 0.96 12 16 0.092 6.5 7.5 0.7 1 23 745 767 745 767 0.96 13 16 0.00073 0.052 14.1 3.1 1 23 773 795 773 795 0.98 14 16 5.5e-07 3.9e-05 23.9 0.6 1 23 801 823 801 823 0.97 15 16 3.3e-05 0.0023 18.3 0.9 1 23 829 851 829 851 0.97 16 16 0.00035 0.025 15.1 0.1 2 23 857 878 856 878 0.96
Sequence Information
- Coding Sequence
- ATGAAGATAGTTTGTGCTTCGTCTACGTGTAAATATGCTTCCGAAGAAGAGGATTCGacaaatgtcatttttataagtTTTCCAAATAATGATGCGTCAAAACTATGGGCTCAAAATTGTAACCGACTGGATTTGTTGAACAAATCTAACGAGGAATTGCATAGTAATTACTATATATGCTCACATCATATAGAAGATCATTGTTTTATTAGCAAATGCAAACCAATCACGATTGCTCAAGGCACAGTTCCAACTCTGTTTCAAATGGAACCTGTAATAGCCCCATTAACAACTGTAACTTCTGAAAAGGCACCtgaatatgaaaatgagcATAAGACATCTGATAATGATGCTCTCAGATACTGTGATATAAATACTGAAATAGAGCAGTACAGTAGCATGACAATAGGATTTTCTAGTTTGTGCCGAATATGTGGCGACGAAGCATCAGATGggatagaaatattttctgcaaAAGGCATTGAATTAAAGCTACGCTATAAAATACAATTGCATATGCCAATATCCATTGATGTTGAAGACATAATGCCACAAAGACTTTGTCTCAATTGTTATAACAAATTAGAAGTCACACATTCACTGGTCACAACATGTTTGCAAACTAACATGCGATTCAGAAGATTCTTAAATATTGAAGGGATGGCAGAATATGATAAGAGATTCGATTCGTTGGTGGAAGAATATTCAATAGAAATGGCTGACGAAATTTGCGGCAACGATACAATTCAAAGTGAAACAATATCTcttgtaccaaaaaaaaatgaagaatcgaCAGCTACTAACAAAATGGAATGTAatctaaacaaattttcagCGACTGCAGAATTGGAACATACCCCAATTAGACGAATCACGGCTGGCGAGTTGAATggtaataatgtaaataagtTGAAATTTACAGTTGATTCAACAAGTGAAGTGCATTCCGATTTGAGCGATTTGTTTCACGTATTTAAAGGCatcaaaaacaaagaaaatgaatgCGCAGTCGAGACTGTTTCAGAGGctcaaaaaattgtccacAATAAAGAAGAGAGTAATCTTACATGTTTATTATGTAAAGATACATTTAAAACGGTagagatatttgaaaatcataaaattttgtgCGACGATGGAGATGCGCTAGATTTAAAACAGCAGAAGGAATCGTCTAATTCTGATAATTTGGCAACACAACCGGCTAGTACAATAGATTTTCAATTCAGTATGAAATCATGCGATGTGTGTGGAAAAGTTTTTGAGACAGAGGCTTTTCTTCAAGATCATGCAATATCCTGCTGCCAGCCATTCGTGCAATACAGCTGCCATATTTGTGACCAACAGTTTGCAAACAAGGAGGAATTTGTTCTTCACGAACAATTCCACATCCCTGTAAATGACGTAACCACTCCAATAAGACGATGTGGTTACTGTCAAGCTACGTGTCACACGCGAAAAGAATTGCAAAATCACATAATGAAGTATCATGGTGGtcaaacattatttaaatgcaatatttGTGACAAAGCGTATGAGAAATGGTCCAGTTTAGACGTTCACGAAGCCACGCATAGATTAGATAAACCCTTCCTTTGTGATTTATgtggaaaaagttttaagcACTCGAATAATTTGAGAGGGCACAAAAGAATTCACTTGGAGGAGTCTAAAAAGAAGCGTCATGTTTGTGGACTCTGCGGCAATGCATTTAGATCTAGATTTCATCTAAATGAGCATATGAATCAACACAATGGTAATAAACCATACGGATGCGAGCAGTGCGGCAAGGCTTTCTACAAAAGAATACAACTGCGTCAACATAAATTGTCCCatggattaaataaatttgcttGTCCAATTTGCGGCGTTACATTTAATCGCAGAGGGAACATGAATACGCATTTTAAGAGACACAGTACCCAAGACGGAGTATATACTTGTAGCGTATGTGAACATAGATGTAAATCCATGAGTGATTTAAAAATGCACAGAAAGGAACATTCCGAAGAAGACATAATGGAAAGTGTAAAGAAGAAAGCCATCGACAAGACGCTATGGCAGTGCAGAATCTGTGCTAGAGTATTTTCGAAACGTGCTATTTGGTTGAACCATGAAAGGTCACACACAGGTGAGAAAGTTAGTGTCGAGTGTGACGAATGTGGGAAAAAATTAGCAAGCAAGAGTTCATTAACGTATCACAAAAAATCTATACACTCCTCAGAACGACCACATATGTGTCAATTTTGTGGAGATTCTTTCGTCTCTAAAGAGGCGAGATTGATACACGAACGTATTCATACTGGCGAACGACCTTacgtatgtaaaatatgtaacaTGCAGTACAGATGTTCAAGTAATCTTAGTCAACATATGAAGATACATTCAGAAGCTAGGCCCCACGTATGTCCATATTGTAATAAAGGCTTTACACGTAAAGGCGCACTTAATGTTCACGAACGTATTCATACTGGTGTTAAACCATTCGCGTGTGTCGTATGTGGTAGAAATTTCTCGCAGAAAAATGATATGCTCAAACATACGAAAACTCATCGTGTTAAATCAATTCGCTGCGAACAGTGTGATCAGGTGTTTGCGACCAAGAGGGAAATCCTTAAACACATTGCGGTGCATGAACAAAATGTAGAGAATTCTGTTATACAGCGATATGTGGACATGCCGCAACAGCTAGAATCTTACTCAATAAATATACCTTATTCTAGTATCGAGGAATCCGCTGAGTTGGAGATTGcacacaataattaa
- Protein Sequence
- MKIVCASSTCKYASEEEDSTNVIFISFPNNDASKLWAQNCNRLDLLNKSNEELHSNYYICSHHIEDHCFISKCKPITIAQGTVPTLFQMEPVIAPLTTVTSEKAPEYENEHKTSDNDALRYCDINTEIEQYSSMTIGFSSLCRICGDEASDGIEIFSAKGIELKLRYKIQLHMPISIDVEDIMPQRLCLNCYNKLEVTHSLVTTCLQTNMRFRRFLNIEGMAEYDKRFDSLVEEYSIEMADEICGNDTIQSETISLVPKKNEESTATNKMECNLNKFSATAELEHTPIRRITAGELNGNNVNKLKFTVDSTSEVHSDLSDLFHVFKGIKNKENECAVETVSEAQKIVHNKEESNLTCLLCKDTFKTVEIFENHKILCDDGDALDLKQQKESSNSDNLATQPASTIDFQFSMKSCDVCGKVFETEAFLQDHAISCCQPFVQYSCHICDQQFANKEEFVLHEQFHIPVNDVTTPIRRCGYCQATCHTRKELQNHIMKYHGGQTLFKCNICDKAYEKWSSLDVHEATHRLDKPFLCDLCGKSFKHSNNLRGHKRIHLEESKKKRHVCGLCGNAFRSRFHLNEHMNQHNGNKPYGCEQCGKAFYKRIQLRQHKLSHGLNKFACPICGVTFNRRGNMNTHFKRHSTQDGVYTCSVCEHRCKSMSDLKMHRKEHSEEDIMESVKKKAIDKTLWQCRICARVFSKRAIWLNHERSHTGEKVSVECDECGKKLASKSSLTYHKKSIHSSERPHMCQFCGDSFVSKEARLIHERIHTGERPYVCKICNMQYRCSSNLSQHMKIHSEARPHVCPYCNKGFTRKGALNVHERIHTGVKPFACVVCGRNFSQKNDMLKHTKTHRVKSIRCEQCDQVFATKREILKHIAVHEQNVENSVIQRYVDMPQQLESYSINIPYSSIEESAELEIAHNN
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00252993;
- 90% Identity
- iTF_00252993;
- 80% Identity
- -