Cpyg005325.1
Basic Information
- Insect
- Calameuta pygmaea
- Gene Symbol
- -
- Assembly
- GCA_031762395.1
- Location
- JASANN010000266.1:1537763-1542414[-]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 4 1.1e-12 1.1e-09 37.9 0.0 1 39 292 331 292 335 0.90 2 4 3.4e-12 3.3e-09 36.3 0.1 2 39 347 384 346 387 0.94 3 4 1.2e-18 1.2e-15 57.0 0.0 2 45 402 446 401 446 0.97 4 4 1.4e-18 1.4e-15 56.8 0.1 1 42 453 495 453 496 0.97
Sequence Information
- Coding Sequence
- ATGGACCCCGTCACCCTCCTGAACTTTCGAGTCAGGATGCTGGTTTCCGAAGCGCCGAATTGTTTCCGCGTTTTGTGCGCCGATTCCCTGCTCAAGACAGCCGATCAGCTGAAGATCAAGGGCCTCTGCGAAGTACCAGAGAGCAAGGACGGTCCACCGTCGGTCAGTCTGAGCTCACCAGGTATAGAGGCAGGCACACCGCGGCTCAACTACGCAAAACTGAAGAGGCATCATCCAAGGTACAAGAGACCCAGGTTCGAGCCCCGAACCGACTCCAGGCATTACGAGAAGTATAAAGAGGAAGAGGCCACCGAGGCCTTTAGTCGTGACGATAAGGAGAATCACAGAGGCTGGCAGACCGAGGATGAAGAGTGCGCAGAGGCCGCAGTAGTCCTGGAGTCCTGCCAACGTGACAACAACAACGGTAACAgtacaaataacaataacgGTGACATGTTTTGTCACACAGGGTTAGGTCACTACGGTCATCATCCGGACCCGGGAGAGGTCGATCTGCCCCCTGAGACTCAGCCCACACCCCCCAGCGCTACTTTAGTTGGCACCACGATCACCCACCTGAGAGATCCCGATCATCACTCGACAGATATCCAGAATTGCGACAGTGTCAAGATCAAGTTCGAGACTTTGCACACGATGGATTCCTCGGAtacgatcgatatcgatagcCACATGTCGGACAGGGCGAGTGTGAGTTCGAAGAACGCTGTGGATAACGATAATATGATGATGATCACGCCAGAATTATTGGGCCTCATGCCGTCGGGAAGTTCGGTACATTCGGATTCCGGTGAGACAAATGCGAGAGGACATTCGGGTCAGTCTGGCTCGCATCATCACGGTTCCAAGTCTTGGACGCAGGAGGACATGGACGCGGCCTTGGAGGCCCTCAGGAATCACGATATGAGTCTTACAAAAGCATCAGCAACATTCGGTATACCATCGACGACCTTGTGGCAGCGTGCTCATCGTCTTGGCATTGATACTCCAAAAAAGGACGGACCCACCAAATCTTGGAGCGACGAGAGTCTGAATAACGCGCTGGAGGCACTTAGGACCGGTACCATCTCGGCTAACAAGGCTTCAAAGGCCTTTGGCATTCCCTCGAGCACCTTGTACAAAATTGCTAGGAGAGAGGGTATCAGATTAGCTGCTCCCTTCAACGCGAGCCCCACTACTTGGTCCCCTGCCGACCTGGACAGAGCCCTCGAGGCAATAAGGTCCGGTCAGACGTCGGTGCAAAGAGCTTCGACCGAGTTTGGAATTCCTACGGGAACTCTCTACGGGAGATGCAAGAGAGAAGGTATCGAGCTCAGCAGAAGCAACCCGACGCCTTGGAGTGAAGACGCCATGACGGAGGCTCTAGAAGCCGTTCGATTGGGTCACATGAGCATCAACCAAGCAGCCATTCACTATAATTTACCATATTCATCCCTTTATGGGCGATTCAAAAGAGGGAAGTACGAAGAACCTGTTGTCAGTGAAATGTCGCAAGATGGCGGTAGCCCTCACTATCATGAGAGTCCTAATCAGAATCACTCCACTTCGCTCCCCGATCAAATGCCCTATCAGGGCAGCTGA
- Protein Sequence
- MDPVTLLNFRVRMLVSEAPNCFRVLCADSLLKTADQLKIKGLCEVPESKDGPPSVSLSSPGIEAGTPRLNYAKLKRHHPRYKRPRFEPRTDSRHYEKYKEEEATEAFSRDDKENHRGWQTEDEECAEAAVVLESCQRDNNNGNSTNNNNGDMFCHTGLGHYGHHPDPGEVDLPPETQPTPPSATLVGTTITHLRDPDHHSTDIQNCDSVKIKFETLHTMDSSDTIDIDSHMSDRASVSSKNAVDNDNMMMITPELLGLMPSGSSVHSDSGETNARGHSGQSGSHHHGSKSWTQEDMDAALEALRNHDMSLTKASATFGIPSTTLWQRAHRLGIDTPKKDGPTKSWSDESLNNALEALRTGTISANKASKAFGIPSSTLYKIARREGIRLAAPFNASPTTWSPADLDRALEAIRSGQTSVQRASTEFGIPTGTLYGRCKREGIELSRSNPTPWSEDAMTEALEAVRLGHMSINQAAIHYNLPYSSLYGRFKRGKYEEPVVSEMSQDGGSPHYHESPNQNHSTSLPDQMPYQGS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00292363;
- 90% Identity
- iTF_00292363;
- 80% Identity
- iTF_00252726;