Cpal006680.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Calameuta pallipes
Gene Symbol
-
Assembly
GCA_030142375.1
Location
JARQSW010000427.1:91252-92097[-]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 8 0.21 16 6.4 2.6 1 23 29 52 29 52 0.96
2 8 0.045 3.6 8.5 2.8 1 23 66 89 66 89 0.89
3 8 7.4e-06 0.00058 20.4 1.5 1 23 95 118 95 118 0.95
4 8 1.5e-05 0.0012 19.4 1.5 2 23 124 146 123 146 0.96
5 8 0.0048 0.38 11.5 1.0 1 23 151 174 151 174 0.96
6 8 0.0002 0.016 15.8 0.1 3 23 182 203 180 203 0.93
7 8 2.5e-06 0.0002 21.8 3.5 1 23 209 231 209 231 0.96
8 8 4.5e-07 3.5e-05 24.2 0.1 1 23 237 259 237 259 0.98

Sequence Information

Coding Sequence
ATGGATGCATTTATTTTCGGATGTTTTAGGTGCATCCTGACTGCCTCGAAGGAGACGTCAAGAAGCGCAAGTACGAAATGGAAATTCTCCTGTTCCACTTGCAGCTATAAATCAGGAAAGTTGTCGAGCCTGCACCTGCACGTTCTAAGGAATCATTCGAAGCGGATCACGAGCCGGAAGGACGCGGCTCGATCTTTCGAATGCAGAGTCTGCGGCCTGAGTTTCGAACAAAAGTGCATCCTGAAGACGCACTTTGTGCGCAAGCACACGCACATTTATAAGTTCTCGTGTGATCAATGCGGTAAGAAGTACAAGGTGAAGGGGGATCTGAGGAATCACGTGCGATTTTATCACGAGGAGCAGCCGATCGTGTGCGAGGTCTGTGGGAAGGCTTGTTCCAACAGCAACTCCCTCTACACGCATCAGAAGCGATTCCACTACAAGCCAAAGTTCGAGTGCGCCGTGTGCAAGCGGCGCATGGTCACTCGGGAGAACCTGGAGCAGCACGTGCACTCGCAGCACGAGAGGCGCGAGCGAGTGATCTGCGAGGGCTGCGGCAAGTCCTTCTCGGACAAGCTCATCCTCAGCAGACATCTCGAGTCGGTTCACAACGGTGTCAAGTCCCACGCTTGCCAAGTCTGCCGCAAGTCCTTCGCCAGAAACTCGCATCTCAGGCAGCATCTTCTCATTCACACGGGGAAAAAGGTTTTCGTGTGTGACGTTTGCGGCAAGAGTTTCGCTCAGAAACCCGGACTCATCACTCATCGCAAGATTCATCCGGGTGTCCTTGCGCCACTGCCTGTCGTCAGGCTCGACGAAGTCCTCGGTgactttttcaagaaataa
Protein Sequence
MDAFIFGCFRCILTASKETSRSASTKWKFSCSTCSYKSGKLSSLHLHVLRNHSKRITSRKDAARSFECRVCGLSFEQKCILKTHFVRKHTHIYKFSCDQCGKKYKVKGDLRNHVRFYHEEQPIVCEVCGKACSNSNSLYTHQKRFHYKPKFECAVCKRRMVTRENLEQHVHSQHERRERVICEGCGKSFSDKLILSRHLESVHNGVKSHACQVCRKSFARNSHLRQHLLIHTGKKVFVCDVCGKSFAQKPGLITHRKIHPGVLAPLPVVRLDEVLGDFFKK