Basic Information

Insect: Calameuta pallipes
Gene Symbol: -
Assembly: GCA_030142375.1
Location: JARQSW010000101.1:223712-226095[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 11 0.00041 0.032 14.9 0.7 3 23 111 131 111 131 0.98

2 11 4.3e-05 0.0034 18.0 2.2 1 23 137 159 137 159 0.98

3 11 0.008 0.63 10.8 0.2 1 23 165 187 165 187 0.97

4 11 0.0039 0.31 11.8 3.0 1 23 193 215 193 215 0.96

5 11 7.6e-06 0.00059 20.3 2.4 1 23 221 243 221 243 0.98

6 11 5.1e-06 0.0004 20.9 0.2 1 23 249 271 249 271 0.98

7 11 0.012 0.96 10.2 4.2 1 23 277 299 277 299 0.98

8 11 6.2e-06 0.00049 20.6 0.7 1 23 305 327 305 327 0.98

9 11 0.00034 0.026 15.2 3.7 1 23 333 355 333 355 0.98

10 11 0.00011 0.0083 16.7 3.7 1 23 361 383 361 383 0.97

11 11 2e-05 0.0015 19.0 0.4 1 23 390 412 390 412 0.99

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	11	0.00041	0.032	14.9	0.7	3	23	111	131	111	131	0.98
2	11	4.3e-05	0.0034	18.0	2.2	1	23	137	159	137	159	0.98
3	11	0.008	0.63	10.8	0.2	1	23	165	187	165	187	0.97
4	11	0.0039	0.31	11.8	3.0	1	23	193	215	193	215	0.96
5	11	7.6e-06	0.00059	20.3	2.4	1	23	221	243	221	243	0.98
6	11	5.1e-06	0.0004	20.9	0.2	1	23	249	271	249	271	0.98
7	11	0.012	0.96	10.2	4.2	1	23	277	299	277	299	0.98
8	11	6.2e-06	0.00049	20.6	0.7	1	23	305	327	305	327	0.98
9	11	0.00034	0.026	15.2	3.7	1	23	333	355	333	355	0.98
10	11	0.00011	0.0083	16.7	3.7	1	23	361	383	361	383	0.97
11	11	2e-05	0.0015	19.0	0.4	1	23	390	412	390	412	0.99

Sequence Information

Coding Sequence: ATGAACATCGGTACAGCCACGGAAGTAAAGATTTTAGCCAACGATAAAACGGAACCGTGGAACTCTGTATTCATCAAGCCTGAGCCTGAAGAATATAGTCCTGTAAATGACAGCATTTATTCTATGGATCAAGCAGTGAAGTCTGAGCTAGAAGACACAGCTTTATCAGGGAGACAAAGTGTACTTGCAATCACAAAGAATTCAAACAATTCAAGGGAATACATTCACTccattaatattacaaatatttctgaGAAGAGGAGAGACTATCGTATGAAGAGAGGATTACAGTCAGCATCATCAATGTTAAGCAGAAGAAAGATCCATTGGTGTGACCAATGTCAGAGGGAGTTTAAGACCGCACAAAGCTTAAGATATCATATTGGAACCCATACAGGGAATAAACTCTTTCATTGTTCTGTCTGCAATAAGGGTTTCCAAAGACTATATGATATGAATGACCACATGAGGATCCATTCGGATGTAAAACCATTTGAGTGTGGAATCTGCAAGAAGGGTTTTCTTAGACCACGAGATTTAAAGTTTCACATGGCAGTACATTCTGACCAAAAACCACATGAATGTCCTGTATGCAAGAAGAGATTCCTAAGAACACACGACCTTAAGGAACATGTGGGTACACATTCCAATGACAAACCACACAAGTGTAATATCTGTAACAAAGGATTCCAAAGGGCAGATAGGTTGCGGTCCCATATAAATACTCATGCTGAGACCAAACCTTACATATGTCCAGTTTGTGCGAAAGGTCTCTCCAGATCTTTCGATCTCAAGGTACATATGAGGACACACTCTGATGTAAAACCTTTTGAATGCCAAATTTGTAAACAGGGCTTTCTCAGGAGATGCGATCTCACTTCGCATATGCATATCCATGAGAACAAAAAACCATTTGTTTGTGACGTCTGTAAAAAGGGGTTTGTCAGGATGTCGTACTTAAGGGTTCACAAGAGGATACATCTGGATGAAAAACCATTTGAATGTGAAATCTGCTGTAAACGTTTCATTAGGACACATGACTTAAACATTCACATGCGTTGGCACACAGGCGAAAAGCCATTCGAATGTGACATTTGCAAGAAGAGGTTTCGAAATCACCACGCGATGAAGTTGCATATAATGGCACATATGGAAGGTGGTCGTCCTTACAAATGTCCCATTTGCAATCGAGGTTTTCAACGTGCAGACTTTGTTAATATTCACTTAAAAACGCACAGAAGGAAAGGTGAGATCAGTGAAAccgataaaattcttttaactaATACACAAAGAGAACAGTCCAAAAatgcaatgatttttctagaaaatttcttagaaCCTGACGATTCTGAGTGCCTAGAGATTGAGAATCAATCAGGGCACACGTTAATTAATCAAGAAATAGTGAGCATGCTGAAAACTGAATTAGGTACGTGTAGTGATACCCAAGATGAGAGAAGTCTAGAAATAATGACATGCAACAGTGTAACTTCTGGGGATGATAACAATGATGGTGATAATGTACCAGTACAAAGCAACGATGGCCAAGGTAGAActgaaagtaattttattacaagagACGCTCTTGAGCATCAGAGTTATAATAGACAAAGTGAGATGGCATTTATTAAAAACGAGCCTGCAAATACACCAGATAATGCAGGCATGGATGCTGTAAGTGCATTTGAGAGAAATCGACAGCTTGTATGTGTCAATATAAAGAATGAGCCGATCGAAACAGACTGA
Protein Sequence: MNIGTATEVKILANDKTEPWNSVFIKPEPEEYSPVNDSIYSMDQAVKSELEDTALSGRQSVLAITKNSNNSREYIHSINITNISEKRRDYRMKRGLQSASSMLSRRKIHWCDQCQREFKTAQSLRYHIGTHTGNKLFHCSVCNKGFQRLYDMNDHMRIHSDVKPFECGICKKGFLRPRDLKFHMAVHSDQKPHECPVCKKRFLRTHDLKEHVGTHSNDKPHKCNICNKGFQRADRLRSHINTHAETKPYICPVCAKGLSRSFDLKVHMRTHSDVKPFECQICKQGFLRRCDLTSHMHIHENKKPFVCDVCKKGFVRMSYLRVHKRIHLDEKPFECEICCKRFIRTHDLNIHMRWHTGEKPFECDICKKRFRNHHAMKLHIMAHMEGGRPYKCPICNRGFQRADFVNIHLKTHRRKGEISETDKILLTNTQREQSKNAMIFLENFLEPDDSECLEIENQSGHTLINQEIVSMLKTELGTCSDTQDERSLEIMTCNSVTSGDDNNDGDNVPVQSNDGQGRTESNFITRDALEHQSYNRQSEMAFIKNEPANTPDNAGMDAVSAFERNRQLVCVNIKNEPIETD

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00293159;
90% Identity: iTF_00295460;
80% Identity: iTF_00252274;