Basic Information

Insect: Calameuta pallipes
Gene Symbol: SCAND3
Assembly: GCA_030142375.1
Location: JARQSW010000706.1:880-3741[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 15 0.001 0.08 13.6 3.1 1 23 360 382 360 382 0.97

2 15 0.00012 0.0096 16.5 1.1 3 23 390 411 388 411 0.94

3 15 1.5e-05 0.0011 19.4 1.2 2 23 508 529 507 529 0.97

4 15 1.3e-05 0.00099 19.6 2.3 1 23 535 557 535 557 0.98

5 15 8.1e-05 0.0064 17.1 0.3 1 23 563 585 563 585 0.98

6 15 1.2e-06 9.4e-05 22.9 1.4 1 23 601 623 601 623 0.98

7 15 8.6e-06 0.00068 20.2 1.2 3 23 631 651 629 651 0.98

8 15 7.8e-06 0.00061 20.3 1.9 1 23 657 679 657 679 0.98

9 15 0.004 0.31 11.8 0.3 1 23 685 707 685 707 0.99

10 15 7.4e-06 0.00058 20.4 0.3 1 23 713 736 713 736 0.94

11 15 2.2e-05 0.0017 18.9 1.3 1 23 742 764 742 764 0.98

12 15 0.00048 0.038 14.7 4.7 1 23 770 792 770 792 0.98

13 15 7.2e-06 0.00057 20.4 0.2 1 23 798 821 798 821 0.96

14 15 1.9e-05 0.0015 19.1 0.8 1 23 827 849 827 849 0.95

15 15 4.2e-06 0.00033 21.1 4.5 1 23 855 877 855 877 0.99

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	15	0.001	0.08	13.6	3.1	1	23	360	382	360	382	0.97
2	15	0.00012	0.0096	16.5	1.1	3	23	390	411	388	411	0.94
3	15	1.5e-05	0.0011	19.4	1.2	2	23	508	529	507	529	0.97
4	15	1.3e-05	0.00099	19.6	2.3	1	23	535	557	535	557	0.98
5	15	8.1e-05	0.0064	17.1	0.3	1	23	563	585	563	585	0.98
6	15	1.2e-06	9.4e-05	22.9	1.4	1	23	601	623	601	623	0.98
7	15	8.6e-06	0.00068	20.2	1.2	3	23	631	651	629	651	0.98
8	15	7.8e-06	0.00061	20.3	1.9	1	23	657	679	657	679	0.98
9	15	0.004	0.31	11.8	0.3	1	23	685	707	685	707	0.99
10	15	7.4e-06	0.00058	20.4	0.3	1	23	713	736	713	736	0.94
11	15	2.2e-05	0.0017	18.9	1.3	1	23	742	764	742	764	0.98
12	15	0.00048	0.038	14.7	4.7	1	23	770	792	770	792	0.98
13	15	7.2e-06	0.00057	20.4	0.2	1	23	798	821	798	821	0.96
14	15	1.9e-05	0.0015	19.1	0.8	1	23	827	849	827	849	0.95
15	15	4.2e-06	0.00033	21.1	4.5	1	23	855	877	855	877	0.99

Sequence Information

Coding Sequence: ATGGCAACTGACTGGATGACAGAAAAGATTTCAATGAAGAGTGTGCTAAATCAAGTTTTGAATGCAAGAACTGAATCAGATTTTATATCTGTCAAACAAGAAATGGAACTATTTGATGAAACTTTATGTCCTAAAACACAAGAGATAGGAATTAATCGCGATCAATGTATTGATAAGCAAAAGAGTAACGAAACTGATGCAGTGCCATCTTCTTCAAAAGCACAACCAGCTaGTACTTTGCCATCACATAATGGAGAATGCAACACAGATATTTTGCCTGCAATTCCTAACGAAAGAACTTTTGTATTAGCAAGTGTCATAAATCAAGGCTCATTGTGTAGAGGTCAAATTGATGTAATGGAAATACAAGCTGAGGAAGAACacaattacaaatatttattcatttatgaaGATCagttttctaaatttattgtTCTGAAAGCTTTACGAACTAATACTATCAAAGAAGTCACATTGAAACTCTTTGATGTACTGACAATCATTGGAGCACCGCGAGTTTTACAAAGTGGTAATGGTCGCGAATTTACTGAACGTGTGGTGCGCGAATTACGTTCACTTTGGACAAACCTTGCAATAGTGCATGGGAATGTGTCAAAATGTGATGAAAGCAGTAAGAGAGATTatcaaaatcttataaaatcaTGGCTCATAAGAAATCCATCAAAAGTCTGGTATCAAGGTCTTAAATTTATACAGATCCTTGAAAATACAACTTTTCCATCCAAGGATGGTAAAATTCCATATGATTTACTATTTGGCCATAATGTTCACAAGGTATGTGAGAACGGGAGTCTTTCTAAAGAAGTTATGAACAAAATTTGGAGTGAAGAGCAATTGTACGAGCATCTCAAGGAGAATGGAAGCATCTCTcttgatattgaatttcgaaacagCCCAGTTAAATCACCAAGAAATAACAGAAGTACAAATGGTTTTAATTTTGTGAATGTAAAAAGTGAAATGTCACTGAGCACAAATCAAATAGAAGATTCGCAATCCGACGAAGAAACTAGCATAGGTGATAGGTTACAGACACAAGACACAGATAAGTATCTGTTTAGGTGCAAAATTTGCCAGAAACAATATATGAAGTTAGGTCATTTAAAGAATCATGTAAAAGCACACGTGAAAGCAGGTCGTCTTGATTGTACTATTTGCCACAAGACATTCCGTCTTCCAAGTCTATATGATAAGCATATGAATGAAGTTCACAGTCAAGAAAAAATCTTCAGTGATGatgcttttcattttacaaagaGGATGGATACGGATGACATTTCAccagaaaaatctgaaaataaaaacgaaaagttAGAAACTAGATCGGAAGAGAATCCTTTGGAAATAACCGAACGTATAAGTcctgagaaaaaagataacatGCTCCTCTGTATCTCCAACAAAAGTCACAAAAAAAGCCTTAAACGCACAAACGCTCTAGCCAGAAGAAAAGTTTCCAAAGAGAATCGTCTAACAAAAGTGAATGGGGACCCATTGCTCGAGTGCACATATTGTCAACAAAAGTTTGACTTTCCAAGTGTCTTAAAACGACACATGCGGTCTCATACAAATGAAAGACCTTACGTTTGTCAAGTCTGCAACAAGAGTTTCAAGCAGTTAGGACATCTGAGTCAGCATTCTTTGACACATACGGACTACAGGTCTTTCCAATGTGCAATTTGCGGAGTAAAATTTGAGTCTCTGGACAGCTTGAAGAATCATTCGCAAAGTCATAAAGGAGAATCAGTTGTATACCGACCAAAGGAGATTTATCGCCTCTTCGAATGCGACAACTGCAAAAAGGTGTTTACAACAAAAAGTGTCCTAGAACGTCACATATTTACTCATACGCATGAGCGTCAATTTGGCTGTAAAGTATGTGGAAAAAGATTCAAACAAGCAGGTCACGTTAAGTCCCATATGCTGATTCATACAGGAGAACGTAAATTCGAGTGTACTATATGTTCAAAACGTTTTAGCCTATCAAATTCTCTCAAaaaacatatgtatgtacacaacGGCGAAAAACCTTATCAGTGTGACGTATGTGGTGCCAGGTTTCTTGAAAAACGATATCTCAATGGACACTTAATGACCCACACAAATGAGCGTCCATTCTCTTGCAAAATATGTGGTAAAAGGTATACCCTTGCAGATACCCTAAGACGTCATATAAGTGCAGCTCATGAGGATGGCAGAACCTACCAGTGCGAAATCTGTGCAAAAATGTTTAAGCAGCTTGCGCATTTATCAGTTCACAAGAAAGTGCACAACGATGAGCGACCATTTCAGTGTCACCtttgtgagaaaaatttcaaacacaAGAATGTCCTCAAGTCGCACCTGGCGATACACGCTAATGTAAGGCCGTTCGAGTGTGACGTTTGTAAAGCCACCTTTGTGAGAAAAACTAATTTACAAACTCACATAGCATCGGCTCATATGAATGAACGTCCTTATGCATGTAAGATATGCGATAAGCGCTTCAAGCAAATCAGCCATCTGAATGGTCATGTTGTGGTACATAGTAATTCTATGCCATATCAGTGTGACTTTTGTGACCGCCGGTGTAACAGACTAGATAATCTGAAAAAGCATATGCGTCTGCATACTAAAAATAAGGACTAA
Protein Sequence: MATDWMTEKISMKSVLNQVLNARTESDFISVKQEMELFDETLCPKTQEIGINRDQCIDKQKSNETDAVPSSSKAQPASTLPSHNGECNTDILPAIPNERTFVLASVINQGSLCRGQIDVMEIQAEEEHNYKYLFIYEDQFSKFIVLKALRTNTIKEVTLKLFDVLTIIGAPRVLQSGNGREFTERVVRELRSLWTNLAIVHGNVSKCDESSKRDYQNLIKSWLIRNPSKVWYQGLKFIQILENTTFPSKDGKIPYDLLFGHNVHKVCENGSLSKEVMNKIWSEEQLYEHLKENGSISLDIEFRNSPVKSPRNNRSTNGFNFVNVKSEMSLSTNQIEDSQSDEETSIGDRLQTQDTDKYLFRCKICQKQYMKLGHLKNHVKAHVKAGRLDCTICHKTFRLPSLYDKHMNEVHSQEKIFSDDAFHFTKRMDTDDISPEKSENKNEKLETRSEENPLEITERISPEKKDNMLLCISNKSHKKSLKRTNALARRKVSKENRLTKVNGDPLLECTYCQQKFDFPSVLKRHMRSHTNERPYVCQVCNKSFKQLGHLSQHSLTHTDYRSFQCAICGVKFESLDSLKNHSQSHKGESVVYRPKEIYRLFECDNCKKVFTTKSVLERHIFTHTHERQFGCKVCGKRFKQAGHVKSHMLIHTGERKFECTICSKRFSLSNSLKKHMYVHNGEKPYQCDVCGARFLEKRYLNGHLMTHTNERPFSCKICGKRYTLADTLRRHISAAHEDGRTYQCEICAKMFKQLAHLSVHKKVHNDERPFQCHLCEKNFKHKNVLKSHLAIHANVRPFECDVCKATFVRKTNLQTHIASAHMNERPYACKICDKRFKQISHLNGHVVVHSNSMPYQCDFCDRRCNRLDNLKKHMRLHTKNKD

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00298497;
90% Identity: iTF_00298497;
80% Identity: -