Cpal008114.1
Basic Information
- Insect
- Calameuta pallipes
- Gene Symbol
- bab1
- Assembly
- GCA_030142375.1
- Location
- JARQSW010000483.1:183189-184796[-]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 1 5.9e-15 6.1e-12 45.3 0.1 3 45 343 385 341 385 0.92
Sequence Information
- Coding Sequence
- ATGGGGACTGCATCTCAACAATACTGCCTCCGCTGGAACAATCACCGTTCAAATCTGCTCACCGTCTTCGATGAGCTCCTGCAGAACGAAGCGTTCACGGACGTGACCCTGGCCGTGGACGGCGGTGCGTCTGTGAAATGTCACAAAATGGTGCTAGCCGCCTGCTCCAGTTACTTCCAGACGCTCTTCATCGACCTACCCTGCAAGCATCCAATAGTAGTCCTGAAGGACGTGAAGTATGCAGAGATCAAGGCAATCCTGGAGTACATGTACCGGGGTGAGGTGAACGTGGCGCAGGAGCAATTAGGAGGCCTTCTGAAGGTAGCCGAGGTGCTGAAGGTGAAGGGTCTCGTGGAGGAGAATGGCTCTCAAGGTCGTCGTGACGAGGGTGAGACGTCGTCGCCACCTCCGGCCATCTCCACGAGTACGACGAGTAGCGCAGCTCACAGTTCCGGACACATTTCACCGCCACACTCGACGGGAACGCCGTACAGTTTGTACGGGAAGTCTCCGGTCGACCGGGCCCAGGGTAGACTCTCGTTACCCATGTGGGCCTTGTCAGGAATGCCCCTGCCCCAGCATCCTGCATCTGGTCATCAGCCTCCGCATCACGCCCAGCACTCGGCCATGCTCGGTGGATCCTACGACAATGGCTCCGACACCTCACCactgaagaggaagaagctcTCGAATCTGATGATGAATCGGGACACACCCATCCTGAGAACTGTTCTTGGACAAGGTCATGCCGACAGTTCTCAGGGTATTCCTCTTCTGCATCCGGACAGCCACGAGACGCACTTTAGGTCTCACAGCAATGGGTCGGCTAACGAGGTGGATCGTAGGAACTCGACTGAGCTATCTCACGGGGAAGCCGTTCACAGTCCTTACACTGACATCTCGATGATGGACGAGGACGAGAAGCAGCCATCGCCACAGTCCTATGCTGGGGACACCAAGTCCGGTATAGTAAACTACGTACCGACGCAGAAGCCTGAGTGGAAGCGTTACAAGCAGTACACCAGGAACGACATAATGTCCGCAATAGAAGCTGTCAGGTCGGGAATGAGTGCCTTACAAGCAGCACGGAAGTACGGGGTGCCCTCGCGCACTCTGTACGATAAGGTTAAGAAATTGGGCATTACGACGTCCAGGCCGTTCAAGAGAAGCTCGAATGGCAGTGGTGCCTGTTTCCCTTACGGCATCGGTGGAAATGCCAATGGGGGAATCTACGGTGGTCTTTCCGAATCGGAGAACGAGAACAGCAGCGCATTGATCGAGCCAGCAGCCGTTCTGGAAACGAGTTTTGGCAAGGAACGTGATCCGGTCGACATGGCGCGATGCAGTCCCAGTCCGGCTGTACTTTCCGTATCGAAACAGCCACAAGTTGAAGATCAAGTGGAGGACCTCTCCGTCGGCAGGAAGCCTGAATTGCGCGTGATCGTACCGCCGGTGTCTTCCATCATCAAGGAGGAAGAACCGGATGCGCCCGACAACTCTGGACGCAACTGA
- Protein Sequence
- MGTASQQYCLRWNNHRSNLLTVFDELLQNEAFTDVTLAVDGGASVKCHKMVLAACSSYFQTLFIDLPCKHPIVVLKDVKYAEIKAILEYMYRGEVNVAQEQLGGLLKVAEVLKVKGLVEENGSQGRRDEGETSSPPPAISTSTTSSAAHSSGHISPPHSTGTPYSLYGKSPVDRAQGRLSLPMWALSGMPLPQHPASGHQPPHHAQHSAMLGGSYDNGSDTSPLKRKKLSNLMMNRDTPILRTVLGQGHADSSQGIPLLHPDSHETHFRSHSNGSANEVDRRNSTELSHGEAVHSPYTDISMMDEDEKQPSPQSYAGDTKSGIVNYVPTQKPEWKRYKQYTRNDIMSAIEAVRSGMSALQAARKYGVPSRTLYDKVKKLGITTSRPFKRSSNGSGACFPYGIGGNANGGIYGGLSESENENSSALIEPAAVLETSFGKERDPVDMARCSPSPAVLSVSKQPQVEDQVEDLSVGRKPELRVIVPPVSSIIKEEEPDAPDNSGRN
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01538079;
- 90% Identity
- iTF_01395220;
- 80% Identity
- iTF_00254447;