Cpal005633.1
Basic Information
- Insect
- Calameuta pallipes
- Gene Symbol
- -
- Assembly
- GCA_030142375.1
- Location
- JARQSW010000393.1:1543947-1551546[-]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 4 1.1e-12 1.2e-09 38.0 0.0 1 39 275 314 275 318 0.90 2 4 3.5e-12 3.6e-09 36.4 0.1 2 39 330 367 329 370 0.94 3 4 1.3e-18 1.3e-15 57.0 0.0 2 45 385 429 384 429 0.97 4 4 1.4e-18 1.5e-15 56.8 0.1 1 42 436 478 436 479 0.97
Sequence Information
- Coding Sequence
- ATGGGGAGTGGGAGTGACGAGGGCTGTGAGGAGTCCCTGCTCAAGACAGCCGATCAGCTAAAGATCAAGGGCCTCTGCGAAGTGCCAGAGAGCAAGGACGGTCCACCGTCGGTCAGTCTGAGTTCACCAGGTATAGAGGCAGGCACACCGCGGCTCAACTACACCAAACTGAAGAGGCACCATCCAAGGTACAAGAGACCCAGGTTCGAGCCCCGAACCGACTCCAGGCATTACGAGAAGTATAAAGAGGAAGAGGCCACCGAGGCCTTTAGTCGTGACGATAAGGAGAATCACAGAGGCTGGCAGACCGAGGATGAAGAGTGCGCAGAGGCCGCAGTAGTCTTGGAGTCCTGCCAACGTGACAACAACAACGGTAACAgtacaaataacaataacgGTGACATGTTTTGTCACACAGGGTTAGGTCACTACGGTCATCATCCGGACCCGGGAGAGGTCGATCTACCCCCTGAGACTCAGCCCACACCCCCCAGCGCTACTTTAGTTGGCACCACGATCACCCACCTGAGAGATCCCGATCATCACTCGACAGATATCCAGAATTGCGACAGTGTCAAGATCAAGTTCGAGACTTTGCACACGATGGATTCCTCGGAtacgatcgatatcgatagCCACATGTCGGACAGGGCGAGTGTGAGTTCGAAGAACGCTGTGGATAACGATAATATGATGATGATCACGCCAGAATTATTGGGCCTCATGCCATCGGGAAGTTCGGTACATTCGGATTCCGGTGAGCCAAATGCGAGAGGACATTCGGGTCAGTCTGGCTCGCATCATCATGGTTCCAAATCTTGGACGCAGGAGGACATGGACGCGGCCTTGGAGGCCCTTAGGAATCACGATATGAGTCTTACAAAAGCATCAGCAACATTCGGTATACCGTCGACGACCTTGTGGCAGCGTGCTCATCGTCTTGGCATTGATACTCCAAAAAAGGATGGACCAACCAAATCTTGGAGCGACGAGAGTCTGAACAACGCGCTGGAGGCACTCAGGACCGGTACCATCTCGGCTAACAAGGCTTCAAAGGCCTTTGGCATTCCCTCGAGCACCCTGTACAAAATTGCTAGGAGAGAGGGTATCAGATTAGCTGCTCCCTTCAACGCGAGCCCCACTACTTGGTCCCCTGCCGACCTGGACAGAGCCCTCGAGGCAATAAGGTCCGGTCAGACGTCGGTGCAAAGAGCTTCGACCGAGTTTGGAATTCCTACAGGAACTCTCTACGGGAGATGCAAGAGGGAAGGTATCGAGCTCAGCAGAAGCAATCCGACGCCTTGGAGCGAAGACGCCATGACGGAGGCTCTGGAAGCCGTTCGATTGGGTCACATGAGCATCAACCAAGCAGCCATTCACTATAATTTACCATATTCATCACTTTATGGACGATTCAAAAGAGGGAAGTACGAAGAACCTGTTGTTAGTGAAATGTCTCAAGATGGCGGTAGCCCTCACTATCATCAGAGTCCTAATCAGAATCACTCCACTTCTCTACCCGATCAAATGCCTTATCAGGGCAGCTGA
- Protein Sequence
- MGSGSDEGCEESLLKTADQLKIKGLCEVPESKDGPPSVSLSSPGIEAGTPRLNYTKLKRHHPRYKRPRFEPRTDSRHYEKYKEEEATEAFSRDDKENHRGWQTEDEECAEAAVVLESCQRDNNNGNSTNNNNGDMFCHTGLGHYGHHPDPGEVDLPPETQPTPPSATLVGTTITHLRDPDHHSTDIQNCDSVKIKFETLHTMDSSDTIDIDSHMSDRASVSSKNAVDNDNMMMITPELLGLMPSGSSVHSDSGEPNARGHSGQSGSHHHGSKSWTQEDMDAALEALRNHDMSLTKASATFGIPSTTLWQRAHRLGIDTPKKDGPTKSWSDESLNNALEALRTGTISANKASKAFGIPSSTLYKIARREGIRLAAPFNASPTTWSPADLDRALEAIRSGQTSVQRASTEFGIPTGTLYGRCKREGIELSRSNPTPWSEDAMTEALEAVRLGHMSINQAAIHYNLPYSSLYGRFKRGKYEEPVVSEMSQDGGSPHYHQSPNQNHSTSLPDQMPYQGS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00292363;
- 90% Identity
- iTF_00292363;
- 80% Identity
- -