Basic Information

Insect: Calameuta idolon
Gene Symbol: SCRT1
Assembly: GCA_030142285.1
Location: JARQSV010000348.1:1606946-1608371[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 5 1.3e-05 0.00096 19.5 1.1 1 23 281 303 281 303 0.96

2 5 0.02 1.4 9.6 0.2 2 23 313 334 312 334 0.94

3 5 9.4e-07 6.8e-05 23.2 0.4 1 23 338 360 338 360 0.97

4 5 3.1e-08 2.3e-06 27.8 0.6 3 23 368 388 366 388 0.98

5 5 3.7e-05 0.0027 18.1 1.7 1 21 394 414 394 415 0.95

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	5	1.3e-05	0.00096	19.5	1.1	1	23	281	303	281	303	0.96
2	5	0.02	1.4	9.6	0.2	2	23	313	334	312	334	0.94
3	5	9.4e-07	6.8e-05	23.2	0.4	1	23	338	360	338	360	0.97
4	5	3.1e-08	2.3e-06	27.8	0.6	3	23	368	388	366	388	0.98
5	5	3.7e-05	0.0027	18.1	1.7	1	21	394	414	394	415	0.95

Sequence Information

Coding Sequence: ATGTGCGGCATGAGAATTGGTGCAGTTATATCATACGAGGCCAATGTGGGGTGGTCTACTGCAGTGACCGCCACGACCGATACAGCTGCCCCAATTCTAGGCTGGGCGAGGGACCGTGTAGCCAGGCGATGCGGCTCTGAGAAACAGCTGGATGATTTTGATCTTACTTCGGTTTCAGGATACACGCACGAGACGTGGATCAACCACGAGGAACCGCCAAAGTATGCTACCCTCCGCTCAGCCGCTGAACTGGCCAGTCCCATCGTGGCTCCTGCTTCTCCATCCCATCAGCAAGCTCAGCAGCAACATccgcatcagcatcagcaggaTATCGGAGGTGCGGCCGGGTCCCTGCAACCTCCAGGAACGATCGCCCTACCGCCACGGAAGAGTCTCTCCATGTGCTTCACTAGTACGGGCACGGCCCTGTCCTTACCGCCCAAGAAGAAAGACATCTATCGTCCCTACAGTCTGCAACCGGAAATACGTACCCCGGCGGAAGAGGATCTATCGGCAGCTCAAGCGATTCTTGATCTAAGCGCATCACCAGCAGCTCCAAGTCACTCGGTCTTCGTGCACACTCTTTCGCCACCTCCTCAGCCACCGCAACCGGTACCGATACCGGTCTCTGTCCTGGTACCAGTACCGACCTCGCAGAACCCACCAAGACAGGAGCAGAGCGTGACGCCTCAACCGCAGTCGCCGGAAACCGCCGAGGCCGGGAACAAGACGGTAGCCTATACCTACGAGGCCTTCTTCGTCTCCGACGGTCGCTCGAAACGTCGCTCTACCAACGCCGCTGTACCGGACAAGGAAGCTGCTCAACCGGACAAGCCGAAGTTCACCTGCATCGAGTGCGGCAAGCAGTACGCGACCTCGTCCAACCTATCGCGACATAAACAGACACATCGCAGCCTGGATTCTCAATCGGCCAAGAAGTGCATCCACTGTGGGAAAGCGTACGTCAGCATGCCTGCCCTGGCCATGCACGTGCTGACCCACAAGCTAGCTCACAGCTGCGGGGTCTGCGGCAAGATGTTCTCCAGACCCTGGCTACTCCAAGGTCACCTGCGTAGCCACACGGGAGAGAAGCCTTACGGTTGCGCACACTGCGGCAAGGCCTTCGCCGACCGGTCCAACCTTCGTGCCCACATGCAGACCCACTCGGCCGATAAGAATTACGAGTGCTCGCGCTGTCACAAAACGTTCGCACTCAAGTCCTATCTGAACAAGCACTTGGAGTCGGCTTGTCTCCGCGACGAGGAGCTGCAGACCTCAGCGTCCTCGCCCGGAAGTGCCGGCGCGACACCCGACGGCGCTCCGATGCAACCGAGCTGCGGCTTGTAG
Protein Sequence: MCGMRIGAVISYEANVGWSTAVTATTDTAAPILGWARDRVARRCGSEKQLDDFDLTSVSGYTHETWINHEEPPKYATLRSAAELASPIVAPASPSHQQAQQQHPHQHQQDIGGAAGSLQPPGTIALPPRKSLSMCFTSTGTALSLPPKKKDIYRPYSLQPEIRTPAEEDLSAAQAILDLSASPAAPSHSVFVHTLSPPPQPPQPVPIPVSVLVPVPTSQNPPRQEQSVTPQPQSPETAEAGNKTVAYTYEAFFVSDGRSKRRSTNAAVPDKEAAQPDKPKFTCIECGKQYATSSNLSRHKQTHRSLDSQSAKKCIHCGKAYVSMPALAMHVLTHKLAHSCGVCGKMFSRPWLLQGHLRSHTGEKPYGCAHCGKAFADRSNLRAHMQTHSADKNYECSRCHKTFALKSYLNKHLESACLRDEELQTSASSPGSAGATPDGAPMQPSCGL

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00255244;
90% Identity: iTF_00298599;
80% Identity: iTF_00253744;