Basic Information

Insect: Calameuta idolon
Gene Symbol: -
Assembly: GCA_030142285.1
Location: JARQSV010000570.1:185626-187661[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 10 0.039 2.8 8.6 0.2 1 23 219 241 219 241 0.97

2 10 0.0048 0.35 11.5 0.2 2 23 258 279 257 279 0.95

3 10 0.012 0.85 10.3 0.5 1 23 327 349 327 349 0.94

4 10 0.018 1.3 9.7 4.8 1 23 357 379 357 379 0.98

5 10 5.3e-05 0.0038 17.7 1.4 1 23 385 407 385 407 0.96

6 10 0.011 0.79 10.4 1.7 3 23 414 434 412 434 0.97

7 10 2.8e-06 0.0002 21.7 1.4 1 23 440 462 440 462 0.98

8 10 0.0007 0.051 14.1 1.2 1 23 468 490 468 490 0.98

9 10 2.5e-05 0.0018 18.7 2.4 1 23 496 518 496 518 0.99

10 10 1e-06 7.4e-05 23.0 0.5 1 23 524 546 524 546 0.98

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	10	0.039	2.8	8.6	0.2	1	23	219	241	219	241	0.97
2	10	0.0048	0.35	11.5	0.2	2	23	258	279	257	279	0.95
3	10	0.012	0.85	10.3	0.5	1	23	327	349	327	349	0.94
4	10	0.018	1.3	9.7	4.8	1	23	357	379	357	379	0.98
5	10	5.3e-05	0.0038	17.7	1.4	1	23	385	407	385	407	0.96
6	10	0.011	0.79	10.4	1.7	3	23	414	434	412	434	0.97
7	10	2.8e-06	0.0002	21.7	1.4	1	23	440	462	440	462	0.98
8	10	0.0007	0.051	14.1	1.2	1	23	468	490	468	490	0.98
9	10	2.5e-05	0.0018	18.7	2.4	1	23	496	518	496	518	0.99
10	10	1e-06	7.4e-05	23.0	0.5	1	23	524	546	524	546	0.98

Sequence Information

Coding Sequence: ATGGCGTCGGGCGATGCGTTCGAAGGAAGGTTTGGCAATATTTGCCGACTTTGCCTTAAACAAGAGGAAATGATGTCCTCTCTGTTCGAGGCAACAAGTCCAGAGGATGATAGCACGTTTCTGGTACAAAAAGTAACGTCCATCACGCCGGTTCAGATCGAACGAGACGATGGATTACCGGAGTGGATATGCCTCAGTTGTCAACAGCAGGTGGAAAAGTTGTACAATTTTCGTATTCTTGTTGAAATTTCGGATCGCACCCTGCGCTCCTGTTTACAAAGTTCACAGACTTCTCTTCAGGATGGAAAGATTAAGCTGGAAAGTCTTAACAATGAGAATGTTATAGAATATAAAGAGTTCTCAATGGACAGTAATATGCTGGATAGCGATGTTGATCTTTCACAAGTTAATGCTATATTTGTACAAACGGAAGATGGTATTCAGGTGTGGAAGATATGTAAGGTCAGTGGACAGGAAGATGAAGAGGGTGAAGAAACATCAGGAgttattgaagaaaatttaggTCACAGTGGTGCTCCGGAATGTCCTAAGGAAGTGAGCGACTCTGAAATTGATGATTTACAAGGAATTCAGCGTTttttagagaaagaaaaaattaatgtcaaagATATTCAGGCCCAagtgaaacaaatatttacttgtCAATATTGTGACAGTTTATTTCTTACAAGTGATGATCTTGTGGAGCATTTGGAGATACATGAACAAGAAACTGAGAATGCAGAATGTAATGATACTAATAATGATATGAGCTGTCAGTTATGCCTGAAGCCGTTTCAATCAATATCAGAATTAAAGGTACATATCTCAGAACACTTCTTAAATGGTCGTGCTAAATCTGAATCAAACACTCAGCCAGActtgaatgaaaataacacATCACATCCAACTGTCATCACTGTTGACGGtataagagaaaatgaaataaacgaTGATAACGAAACTCGTAAtcgtttatttatatgcatcgACTGCCACGAAGTATTTCCTCAAGAGGAAGATTTCCTGTTACATCGGAATAAGCACTTACCCACTTCAGGAAAGGCATTTAAGTGCAAATACTGTGCCAAAATCTTTTCTCGAATAAGTTCAAAACATTATCATGAGCAGACTCACtctgaaggaaaaaaatatatatgcgtagTGTGTGGAAAATGTTTTGCGAAGAAGAccgaattaaaatatcatgAAGGTACTCACGTGAATGCACCATCGATATGTACAGTATGCAATAAGAACTTCCTAAACGTGCAATCATTTAAGATGCATATGAAAAGGCATATACTCGGCAGTAGATACAATTGCCAAACATGTGGCAAAAGTTATTACACCAATGCAGAGCTTTCAAGACATCTTCAAAAACACTCAGGCCAGCGTCGGTATCCTTGTCACCTATGTGAGATGTCGTTTCTGTCTCAGCCAGAATTAAACagacatttaaaatatcataatgGCGAAAAGAAGTTTAAGTGTAAAATATGCGCCAAGTCTTACTTTGAGTCTGGTCACTTGAAAGTTCACCAAAGGGTTCACACTGGTGAAAAACCCTTTGTATGTACGGTCTGTAATAAGGCCTTCATCACAAAGTCAAAGCTTGTAAGGCATGCGAAGATTCACTCCAAGGAGCAGATTATTGTCTGTGATATATTTCCAATACAGGAAAAGGAGGGTGAGACTGtaccaaatattttctaa
Protein Sequence: MASGDAFEGRFGNICRLCLKQEEMMSSLFEATSPEDDSTFLVQKVTSITPVQIERDDGLPEWICLSCQQQVEKLYNFRILVEISDRTLRSCLQSSQTSLQDGKIKLESLNNENVIEYKEFSMDSNMLDSDVDLSQVNAIFVQTEDGIQVWKICKVSGQEDEEGEETSGVIEENLGHSGAPECPKEVSDSEIDDLQGIQRFLEKEKINVKDIQAQVKQIFTCQYCDSLFLTSDDLVEHLEIHEQETENAECNDTNNDMSCQLCLKPFQSISELKVHISEHFLNGRAKSESNTQPDLNENNTSHPTVITVDGIRENEINDDNETRNRLFICIDCHEVFPQEEDFLLHRNKHLPTSGKAFKCKYCAKIFSRISSKHYHEQTHSEGKKYICVVCGKCFAKKTELKYHEGTHVNAPSICTVCNKNFLNVQSFKMHMKRHILGSRYNCQTCGKSYYTNAELSRHLQKHSGQRRYPCHLCEMSFLSQPELNRHLKYHNGEKKFKCKICAKSYFESGHLKVHQRVHTGEKPFVCTVCNKAFITKSKLVRHAKIHSKEQIIVCDIFPIQEKEGETVPNIF

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_01475714;
90% Identity: iTF_01131074;
80% Identity: -