Cido010298.1
Basic Information
- Insect
- Calameuta idolon
- Gene Symbol
- -
- Assembly
- GCA_030142285.1
- Location
- JARQSV010000587.1:307951-315038[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 31 7.8e-06 0.00057 20.3 1.0 1 23 162 184 162 184 0.98 2 31 0.0034 0.24 12.0 1.9 1 23 207 230 207 230 0.96 3 31 0.00029 0.021 15.3 1.0 2 23 237 259 236 259 0.96 4 31 0.00037 0.027 15.0 0.5 1 21 279 299 279 300 0.95 5 31 0.0031 0.22 12.1 0.2 2 23 397 418 396 418 0.95 6 31 0.0082 0.59 10.8 0.3 1 23 424 447 424 447 0.92 7 31 0.00015 0.011 16.2 0.1 1 23 520 543 520 543 0.96 8 31 0.013 0.91 10.2 0.7 1 23 549 572 549 572 0.96 9 31 0.15 11 6.8 1.5 1 23 585 607 585 607 0.97 10 31 3.2e-05 0.0023 18.4 0.6 3 23 652 673 650 673 0.96 11 31 0.01 0.73 10.5 0.8 2 23 736 759 735 759 0.94 12 31 3.9 2.8e+02 2.3 0.0 2 23 768 790 768 790 0.84 13 31 0.051 3.7 8.3 0.0 2 23 797 819 796 819 0.95 14 31 1.6e-05 0.0012 19.3 1.2 1 23 827 849 827 849 0.98 15 31 0.065 4.7 7.9 1.4 2 23 880 903 879 903 0.93 16 31 0.00026 0.019 15.5 3.3 1 23 906 929 906 929 0.97 17 31 0.037 2.7 8.7 0.5 2 23 936 958 935 958 0.95 18 31 0.0041 0.29 11.7 5.1 1 21 985 1005 985 1006 0.95 19 31 0.0034 0.24 12.0 1.8 2 23 1020 1041 1019 1042 0.93 20 31 0.26 19 6.0 0.9 1 23 1045 1068 1045 1068 0.94 21 31 0.021 1.5 9.5 1.4 2 23 1075 1098 1074 1098 0.91 22 31 1.2 87 3.9 0.2 2 23 1106 1128 1106 1128 0.95 23 31 3.9 2.8e+02 2.3 0.0 2 23 1135 1157 1134 1157 0.87 24 31 0.28 20 5.9 2.7 2 23 1166 1188 1166 1188 0.96 25 31 2.5 1.8e+02 3.0 2.0 2 23 1194 1216 1194 1216 0.92 26 31 3.3 2.4e+02 2.6 0.0 3 23 1279 1300 1277 1300 0.93 27 31 0.00046 0.033 14.7 1.0 1 21 1326 1346 1326 1347 0.95 28 31 0.62 45 4.9 1.3 2 23 1446 1468 1445 1468 0.93 29 31 0.77 56 4.6 0.4 2 23 1475 1497 1474 1497 0.94 30 31 0.87 63 4.4 2.5 1 23 1508 1530 1508 1530 0.97 31 31 0.1 7.3 7.3 0.2 3 20 1539 1556 1539 1558 0.94
Sequence Information
- Coding Sequence
- ATGTACAatctggaaaatttttatgacttCAGAACTGCATGTGTCAATGCGGTGGCATTATTGGAAAGATGTTTACCCTCCAGTGATGCGAGTAACAATGGAGCGCAGACTCATATGGATCAGTATACAGAGTTGCGCTCTGAGCTTCtcaaggagaaagaaaatatgccTATACTCATTCCTGAAGCCCCCATAGTCAATCCCAATGCAGCCCTGGGCACTCCACCAAGACTGAATTCTGATGGTGAAGCGGATCATGAGATTGAAGAAATACTTGATCAGAGTGGCACCGATGAAGgtcaAGACGAGCACGAGGATCCTAAATCGGACGAGTATGAAATGGACATGGAAACTAATCCAAGTGATTTCCTGGAGATGACGTCCATGGTCACTGAAGACGTCGAGGAGATACGATCTCTCTCCATGCCACGTGAAAAACAAGACACCAGTGTTTTCCAGCACACGTCGGAACAGCACGAGGTCTACGTGTGCTCTTTGTGCAACAAGGCCTTCAGCTCGAAAGGGCATCTCTCTCTGCATGCCAGAATCCACGTGGGTGCTGGTGATGTAATCGGCGAGAAAGTCATCACCGACGATCACACTTCCTACAAGAGACCTTATCAATGCGACCTTTGCAATAAGTCGTACTCGACGGCAAAGCACAGATGGGGACACGTCTCAACGACACATAGGGGTCATCCGGCGGTTACATGCAGATACTGTTCTCGGATTTACTCGACGAGAACGAACCTGGAGGAACACATAAAGTCTCGTCATGCGGGCTTACCACCACCTCCGGAACTACCACTTCCTTATATTCAACCTGACAACAGGTTCCAGTGTAAGACGTGCCCAAAGATGTACACGAACGTTACCGATCTGAATAAGCACAGTCGTGTCTGTCTTGGTGAGAGACGTAGGGAACTGCCGAACAAGATTTCTGTTCAGAAGAGCAAAAGTCTTATAGACACGTCGGATCTATCTAGTATGGACTCCGACGACGAGAGTAAGGACTATCGGGATGCCGAAGCGAAACTCGCCAAGAATCCCCAGCTGACTATACTTAAGCAGGCACTGACCAAGGGCGATAGCCTTAAGCGGGATTACGAGGACAAAAATAGAATTGGCTCGAAACCTAAGAAAGTCGCGAGAACAGacAGCAGTGAAACCGACGCCCAGAAGAGATGGTACTGTGAAACCTGTCCACAGAATTTCACGTCGGTGGAGAATTTAAAGGAGCACGAAGTCACCCACGAGGCGGACAAACCCTACATCTGCATCCTCTGCGAAAAGGATTTCGTTCTGAAGTCGTCTCTGAGTAGACACATTTTGACCTCTCACGGGGTCGATCCTTGTCCAATCGTTGACAGTGATAAGTGTCTTAAGAAAACAGTGGCTAATCTGCAAATGCGAAATAAACAGGCGCAGATCATCTACAACGAGTCCAAGTTAACCAAAGAGGCATCTCAATCTCCATTCTCGCCGGAGACGAATATGGATAACGACGAGGAGGATCGTGAGAGCGGCCACGAGAACATGATTGAAATCGAGACTGTGTTTGTCTGTGAAATATGCACTAGAGATTTTAATGATCGCGCGTCACTGTGGTTACACATCAGAGCGACGCATAAAGAATTCGCAGCGTTCGCTTGTGGAGTCtgcttaaaaatttgttcggACAATACTCAGCTCTTGAATCACGTTAATATGTACCACGGTGGCTCAAAGCTTCAGGTCTCAGAACAAAGAAGGTATAGTTGTACAATCTGCGGCAGGCAACACGATTCCAGGAAGAAGCTCATCACTCACGTTTCTATTCATAATGTTGATCCTGGTTATGATCCAGCGAGTTTTGTTCAACTgaatagtaattattataacgagAATCTGAACAGTAACGAAGCCAATGAACAGCCTATTGATTTCGATGGTGAAGATGGAGAGAAGATCGACTGCTATATTTGTTACAAGTCTTTTCCTAACGAGGATCATCTCATTAGGCATCAGCGGAACGCTCACAAGtcCGAACCCCTGGTGCAGATGGGTGACCCTAGCAATGGTAATGGATCCGGTTCTACTCCAGGCAATGGAAATCGTGCTCAGTATCATTTGTTCTTCGTTTGTGAACTTTGTGGCAGTTCGCATCCAAGTAAATGGGAGCGGTGGCTACACGTTAGTGGAGTGCACAGTAATGAATCTGCCATAAGATGTGAGCGCGAGGACTGCGGTAAAATATTTGCTACTAGGTCACTTCGCAACGAGCACGTGCAACATCATCTTCTTCAGGGTGCCTCGCCGAATACCTGCGAGATCTGTGGAAAGCTGTGGGGTAGTCGTGTGGATTACTGGAAGCATGTAATGGGCGTACACTCTGACACGGTACCCTTAATTTGTGGGGTATGTCTAAAGGTCTTCCCCGACGTCATCCAACTCAGTGCTCACGTCAAGTCGAATCATTGGCCTCTGACCAACGGAGACTTCAGCTGTGATATCTGCGGGAGGCCGTACtcgaataaatcaaaaatgtCCCGGCATAGAAAGATACATGGTTTGGATATGGACAGCTACGCCAACAGCACCTTGCACGAGGTCATGAACGATTCTAGGTTGGAACAGGGTTCCCACGAGAGCGATCTCACCTGCGAGATGTGTTCTGACGTCAAATTCACTAGCCTAGATGACCTGTGCAATCACAGAAGAACAGCCCACGGACTGTTCCCTTGTGATCTTTGTAATAAGTGCTACGGACGGACCTCGCACCTTTGGAAACACGTCAATCGTGTTCACAAGGGCCACGAGGACGTCACCTGCAGGTACTGCATGAAAACCAGCGCCTCGAGGGATCATCTCGCTGCTCACATTGCCAAGATACACAGGTACGAGCCGGAGATGAAGAAGGAGATACGGGAGTCGTCCATCTTCAAGTCGCCTAATCCTGAGGACGAGACTCTTCATCATTGTGAAAAGTGTAACAAAGGTTTCCACAAGAGATATCTTCTACGTCGTCACATGAAAGGCTGTCAGAACTACCGGAAGGATCCTGGTGCGTTGCTCACCAGGTGCCGTGCCTGCGAGAGGATATTCAAGGACCGTGCTAGTCTCCAGAAACACATTGAGAATCATCACAGTACCTATACCTGTCATCTCTGCGATGAGACCATAACCTCCAAATTAGGTATCATGACACACAATAGAGTAAACCACATGAACCATCCAGACCTGACTTGTGACTATACCAGTTGCAAGAAACTGTTCCGTACCAAGGAGGACCTGGAGTCTCATCGTAAAGATCACAAGTACCTTGGTACTCCTAACGTCTGCGACTTTTGCGGTGATACCGTTGAGAATAAGCTTAAGCTCAAGATGCACATACTGTCCTTACACCGTAACGAAATCGGAGTATCCTGTGGTGTCTGTCTTATACCCATGAAGGATCCTAAGGAACTCAAGAGACACGTGGAAGACGTCCACCGGAGTATACTGTCTAAACCTAACACCTGTCAGGTGTGCGGCAAGCAATACGCCTCCAAGTGGAAGGCTTTTGATCATACGAAAAAGTGTCACGGCAAGGTGTTCAGGACTTGTAAACAGTGTCTCGCAGTGTTCACTAGTGACGATGATATAAAGCATCACTACGAACACGTTCACAACGTTCCTAAGGATCAGCTTGCTGGTTTTGAGTTCAGGTTGGACGTCGGTCCCAAGCAGGAGGAGTTTGACGCCCCTGATGTCGTTGTTAAGGAAGAGCCACAAGACCTTGATTTCTACGAGGAGCCTTGCGAGGAAGACTATCACAACTCTAAGAGAAGGAGGTCGTTTTCTGATACTCTGGACTGTGAGATGTGTCCTGAGATCTTCCTGAATGACGTTACTCTAGCTGAGCACTATAGGAACGTTCACAATACGGATCCTATGCGTATATTCAAGAAGCTTAAACTAGACACTGCAAAgcgaaaaacgaaaaatcgcgAGAACTTTGAATGCAAGAACTGCAGAAAGCAATTCTCCACGAAGACCCTCTTCTGGAACCATATAAATGTCTGCTCCAAACGTAATTCCGTCAACAGGGATGACAGGGTATACTCCACGTCCATTCTGGAGTCTCACCTCAAGAATAACAATCAGATTAAAAAAGAGGAACCTGAACCCATCCTGAACGAGTCTAATCTGAACATCCCTGACTTCAATCTCTTTGAGGATATTAACATGCAACTCTCTGGACAGAAACCTGTACCTAACCTCATGCCTCTGTCTCATATGAAATCGCTGTCAAGTATAAAGTGCTCGAGAAAGGACTCCAGGAAGGTGTACGATGAGTCGACGAATACCGAGTGTGCCTGTGAAGTCTGTGGAAAACAATGGCCAGCTAAGAAGCATCTCTGGCAGCATCTTATAAGATTTCACAGAACGGAAGCTGCTGTCACCTGTGGCGTTTGTCTGAAGCTCTGTAAAACTTATCAGGACCTGGCGGATCATCTTAAGGCAGCCCACGAAGCCATCCTTACCTGCGAGGGTAACAATTTCACTTGTAAAACCTGCGGCAGGTATCATAATGCTAGAAGTAAATTACTCTTGCATATGAGCATACACATTAATTGTAATGGTAGCAGCTGGTGTAGAAAATGTCAACAGAGTTTTGAGAGTGAAGACAAACTCAAGGAACACGTCGCTATCTGCACTGGTGGTAACCAGGTAGAGTACGAGGATCATAGTAATGATCTGGAGAATGCTGCCAAGAACAACGAGGATGATCACgattataagaatattctTATGGACGACGAGAATTCCTTGATGGAGGAAGTGGATGAGGTCGAGGAAGTTGAGTTTGAGACTGAAGCTTCTGATAATCGTGAGGATAGTAATTCAGATGACAGTGATGATTCCGATAGTGATAGTAATCCTAGTAGTAGTGATGACGAGGATAACGATAATGAGAATGAGGATGAAGCTGAGTGTAGGACTAACAGTAGAGCTACCGAGGTTAGCAGTGACAGTGAGAGTGCAGATCAAGATTCGAACGAGGATAAAGTTAATGTGGATAAAGATGATCATCTAGAGCAGAGTGAAGACATCAAGTGTAATAATATTGTCAAGGCAGAACCTGAGGATGAGGAGGAATCCCAGTATCTAGAGGATAAGAAAGAGTCTCCTGCATTGACGGTAGACGAATATCCTATGGAGGAAAGGATGGATCATGAGAATCACGAGGTTGTCAAGGTCGAGGTTGACGCTCCGGATTACTCTGACGATGACttggacgaggacgacgatgaTGGACCTCCAGTACTAAGTCCAATGATGCCATTACCATCGGCGCAGGATGCAGAAAATGACAACAGACATTCGGACGACGAGATACAGCATAAATTAACGCCTATGGTGTCTATTAAAAAGTCAAATGAGACTGAAGGGGTCGACGATGATGATCACCAGGAGTTCAAAGACGAAATAGGAAACGGTAAGTCGACCTTAAACTCCTCAGAATATTATGAGAAATCCGATCCGCAGAAGGTGAATTCGAATGTGCCTTCACTGGTAGTGGGAGAGTCGCAATCAGATACAGAAGAGGAGGGCGAAGCtgaggatgaggaggaagaGTACGACAGTCAAATGGAAGTTGTTGATCAGACCGATGAAGAGAATAAAAGGTTCATCAATTACGAGACGCATAACACTGAAGACTCCGTTGAGGGTAGCTTCGGAGAAAATTCCGAAGACGAGACAATGGAGGTCGAGGTTGCTGATGGAGATGGTAGCGTCCAGATACACGACCTCGACGGTACTGTACTGATGGTAGCAAATGATTCAGATGGTAATCAGATTCTGATCCAAAGGAACGTAGCCGACGTGATGGAGAACGACGATTCTAATCCGGAAGTCACTGAGTACGTCTACCAAGAAGGGCAGGAGTACGAACTGGAGGAAGGTTATGCGGAGTCGCAGGAGTCGCAGCAAGCAGATGACGTTCAGGACGTCTCCGACGAGGttcaggaggaggaggaggatgaaatTGTTAACGAGGAATTCGAAGAGGAAGTCGTTACGAGGGAAAACGAAGCTGAGGAAGGCGATGAAATGGAACCTGAACAAGAGGAGtatgaggaggaggaagaggaggaggagcaggaggagcaggaagaggaagaggaggaggaggaggagcaggagcagGAGCAGGAGCAAGAGCAAGAGCAAGAGCAAGAGCAAGAGCAAGAGCAAGAACAGGAACAGGAACAGGGACAGGAGCAGGAAGCGGAAGACTGTGAAGAAGAGGTTGttgacgaggacgaggattcCAAAAAACCGATTAATAGTGCCAAAACCGTAGTGTCAAGGACGTAA
- Protein Sequence
- MYNLENFYDFRTACVNAVALLERCLPSSDASNNGAQTHMDQYTELRSELLKEKENMPILIPEAPIVNPNAALGTPPRLNSDGEADHEIEEILDQSGTDEGQDEHEDPKSDEYEMDMETNPSDFLEMTSMVTEDVEEIRSLSMPREKQDTSVFQHTSEQHEVYVCSLCNKAFSSKGHLSLHARIHVGAGDVIGEKVITDDHTSYKRPYQCDLCNKSYSTAKHRWGHVSTTHRGHPAVTCRYCSRIYSTRTNLEEHIKSRHAGLPPPPELPLPYIQPDNRFQCKTCPKMYTNVTDLNKHSRVCLGERRRELPNKISVQKSKSLIDTSDLSSMDSDDESKDYRDAEAKLAKNPQLTILKQALTKGDSLKRDYEDKNRIGSKPKKVARTDSSETDAQKRWYCETCPQNFTSVENLKEHEVTHEADKPYICILCEKDFVLKSSLSRHILTSHGVDPCPIVDSDKCLKKTVANLQMRNKQAQIIYNESKLTKEASQSPFSPETNMDNDEEDRESGHENMIEIETVFVCEICTRDFNDRASLWLHIRATHKEFAAFACGVCLKICSDNTQLLNHVNMYHGGSKLQVSEQRRYSCTICGRQHDSRKKLITHVSIHNVDPGYDPASFVQLNSNYYNENLNSNEANEQPIDFDGEDGEKIDCYICYKSFPNEDHLIRHQRNAHKSEPLVQMGDPSNGNGSGSTPGNGNRAQYHLFFVCELCGSSHPSKWERWLHVSGVHSNESAIRCEREDCGKIFATRSLRNEHVQHHLLQGASPNTCEICGKLWGSRVDYWKHVMGVHSDTVPLICGVCLKVFPDVIQLSAHVKSNHWPLTNGDFSCDICGRPYSNKSKMSRHRKIHGLDMDSYANSTLHEVMNDSRLEQGSHESDLTCEMCSDVKFTSLDDLCNHRRTAHGLFPCDLCNKCYGRTSHLWKHVNRVHKGHEDVTCRYCMKTSASRDHLAAHIAKIHRYEPEMKKEIRESSIFKSPNPEDETLHHCEKCNKGFHKRYLLRRHMKGCQNYRKDPGALLTRCRACERIFKDRASLQKHIENHHSTYTCHLCDETITSKLGIMTHNRVNHMNHPDLTCDYTSCKKLFRTKEDLESHRKDHKYLGTPNVCDFCGDTVENKLKLKMHILSLHRNEIGVSCGVCLIPMKDPKELKRHVEDVHRSILSKPNTCQVCGKQYASKWKAFDHTKKCHGKVFRTCKQCLAVFTSDDDIKHHYEHVHNVPKDQLAGFEFRLDVGPKQEEFDAPDVVVKEEPQDLDFYEEPCEEDYHNSKRRRSFSDTLDCEMCPEIFLNDVTLAEHYRNVHNTDPMRIFKKLKLDTAKRKTKNRENFECKNCRKQFSTKTLFWNHINVCSKRNSVNRDDRVYSTSILESHLKNNNQIKKEEPEPILNESNLNIPDFNLFEDINMQLSGQKPVPNLMPLSHMKSLSSIKCSRKDSRKVYDESTNTECACEVCGKQWPAKKHLWQHLIRFHRTEAAVTCGVCLKLCKTYQDLADHLKAAHEAILTCEGNNFTCKTCGRYHNARSKLLLHMSIHINCNGSSWCRKCQQSFESEDKLKEHVAICTGGNQVEYEDHSNDLENAAKNNEDDHDYKNILMDDENSLMEEVDEVEEVEFETEASDNREDSNSDDSDDSDSDSNPSSSDDEDNDNENEDEAECRTNSRATEVSSDSESADQDSNEDKVNVDKDDHLEQSEDIKCNNIVKAEPEDEEESQYLEDKKESPALTVDEYPMEERMDHENHEVVKVEVDAPDYSDDDLDEDDDDGPPVLSPMMPLPSAQDAENDNRHSDDEIQHKLTPMVSIKKSNETEGVDDDDHQEFKDEIGNGKSTLNSSEYYEKSDPQKVNSNVPSLVVGESQSDTEEEGEAEDEEEEYDSQMEVVDQTDEENKRFINYETHNTEDSVEGSFGENSEDETMEVEVADGDGSVQIHDLDGTVLMVANDSDGNQILIQRNVADVMENDDSNPEVTEYVYQEGQEYELEEGYAESQESQQADDVQDVSDEVQEEEEDEIVNEEFEEEVVTRENEAEEGDEMEPEQEEYEEEEEEEEQEEQEEEEEEEEEQEQEQEQEQEQEQEQEQEQEQEQEQGQEQEAEDCEEEVVDEDEDSKKPINSAKTVVSRT
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00295442;
- 90% Identity
- iTF_00297739;
- 80% Identity
- -