Cido007042.1
Basic Information
- Insect
- Calameuta idolon
- Gene Symbol
- ECU06_1150
- Assembly
- GCA_030142285.1
- Location
- JARQSV010000400.1:449801-452197[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 15 0.0035 0.25 11.9 6.7 1 23 99 122 99 122 0.94 2 15 0.18 13 6.5 2.5 1 22 188 209 188 211 0.90 3 15 4.2e-05 0.003 18.0 1.8 1 23 244 266 244 266 0.98 4 15 1.2e-05 0.00084 19.7 1.6 1 23 272 295 272 295 0.97 5 15 2.8e-06 0.0002 21.7 0.3 1 23 301 323 301 323 0.98 6 15 1.2e-07 8.4e-06 26.0 0.6 1 23 329 351 329 351 0.99 7 15 5.6e-05 0.004 17.6 0.5 1 23 357 379 357 379 0.98 8 15 1e-05 0.00076 19.9 1.6 1 23 385 407 385 407 0.96 9 15 5.7e-05 0.0041 17.5 1.2 1 23 559 581 559 581 0.98 10 15 2.3e-07 1.7e-05 25.1 0.4 1 23 587 610 587 610 0.96 11 15 0.025 1.8 9.3 0.2 1 23 616 638 616 638 0.97 12 15 0.00017 0.012 16.1 7.6 1 23 644 666 644 666 0.96 13 15 7.3e-06 0.00053 20.4 0.6 1 23 672 694 672 694 0.98 14 15 0.00017 0.012 16.1 6.7 1 23 700 722 700 722 0.99 15 15 0.00091 0.066 13.8 1.6 1 23 728 751 728 751 0.96
Sequence Information
- Coding Sequence
- ATGGCACTTTTATCCAGAAATAGTCCCGCACAATTGAATCGAAAATGCGCGGATCCTGGAGAGCAGGAAGTGACTGATCCCTTAGCGCAAACCGGAGAATCTGACGAAGTTAAAGTAGAAGTGCTGAAATACGACGAGAGTAGTCTGAATTCGGTAGATGGAAGCACCGACTCACAATCAGAGTACCAACCGAAAAGTACAGGAACGCATATCCAAAGAAGAAATCCTACTCGGACAATTGCACGAAATTCTGTGATATCCAACGAGCATGTCTCGAAACGAGCTAAGACGATCCACCCTTGTGAAAAATGTGAGCGAGTTTTCAAAagggaatttcattataaGCGGCACGTGGCAAGCTGCCACGAGAAAGTCGTGACAAGAAGCGACAGCGAGGACTGCGCCGAAAGCATTAACGCGGAATCTTCACTAAAGACCCTAAAGACCAAGCTCGTTGAAATGGACGAATCGAATGTTACTGACGAAGGAAGTGAAACTGATAATAAGAGTGTTGATTGGGAAGCAATCTGCAATAAGTCCAGAAGAAGGAGACTTCAGTCATATCCTTGCATGCACTGTGATTATACGgctaagaaaaagaagttacTCGAATTGCACAATGTGGAACACCATCCGGAATTGTCGATTAAGAAGCAAAGTAAAAAGCCCAGGAGCATAGACAAAGAGACTGTAAAACGTGCGAGAATGGAAGTGAATGGAAGAGTCTATTATCACTGTAACGAATGTggtaaaaatctttattctcCTTACACATTCTCTTGGCATATGAGAATTCACACTGGTGAACGTCCCTTTACTTGTCATCTTTGCGGAAAACAATTCCGCGTCAATCAGGGGTTGGCAAGACATCTGCGCGAGACTCATGCGGGTATCAAGAAGTTTCCTTGTGACATTTGCGGTCGCATGTTTTCTACAAAGCGTAACGCCGAGGATCACAGACGGATACATACTGGCGAGAGACCATACGTGTGCAACATATGTGGAAAAGCGTTTAAGCAAAAGGCTTCGCTGTTTGTGCATAATCGCACGCATACTGACTTTTTTCCATTCAAATGTAGCTATTGCGATCAAGGCTTTCGTACCAGACCACCTCTAATGGTACATATCACTAAGCACACGGGCGAGAAGCCGCATGCGTGTGACATATGTGGTCGCCGGTTCCGCATCAAATACGAACTAAAGCGACATCGTCTGATACACTTTGACGAGAAACCTTGGCAGTATTCTTGTCAAGGTGCTAAACTCGTGCCAAAGTGCAGGCTGAGAAAGTTGCCCATCGAAGGAGAAACACAGCGATTAGAAGTCGTTAACTGTGGCAATAAAGTCATCGCGCTCAATAACAAGGAAAGATCTGTGaagaaattcaacaaaaataaaatcatagaAGATGAAGCGTCCagcaaagagaaattcaaCAGGTCGATCGAGACTATCGACATCGAGCAGAAATCAAAAGTTCAGACCGAACCTGAGGAAGTATCGTCAAAGAGCGAGGACGAAGCGAATCTAGAAACGACGAGAGGTTTGCTCAAGGCGcccaatgaaaaatccaaaaaggaGTGCAGCAAGACAGTTAAAACCCGCGTAAAACGAACGTCGGAACAGCGCGCGGAATTGGCACGTTCTCAAATATCCGCAAACGGATCTACGCACTATAAGTGTCGCGAATGCGGAAAATTCCTATCGACCGCCTATAACTTTTTGACGCATCTCACGGTGCATACGGGAGAAAGACCATACACGTGCCATATATGTGGAAAAAGTTTCAGCGCTGCTTCCGGCTTAAACAGACACGTTCGAGATGTTCATAATGGAGTAAAGAATTTCGCGTGCGACATATGCGACCGTAAACTTGCCACGAAGATTGCCAGAGACGAACATCGTAGGACCCACACTGGAGAGCGACCACACGTCTGCGAGACTTGCGGCAAGTGCTTCAAGCAAAAAGCCTCGCTTCACGTTCACAAGCGTTTTCATGCAAAGGACTTGACTTACTCGTGCTCGCTGTGCGACCGTGGCTTCCGAAGGAAGCAGGAACTCGATAAGCATATTCTCATTCACACTGGGCAAAAGCCCTACACTTGCGACATGTGCGGGAAACATTTTCGTAGCAAGGGATGTATTAGTCGACACAAGCGCACTCACGGTAGTCAGAAGCTACATCGATGCTCCGCTTGCGGGGCTGGGTTCTCGCAAGAGCGATACCTCAAGAATCACACAAGGAACATGCACAAAACTGCGCGTACTCCAACATGA
- Protein Sequence
- MALLSRNSPAQLNRKCADPGEQEVTDPLAQTGESDEVKVEVLKYDESSLNSVDGSTDSQSEYQPKSTGTHIQRRNPTRTIARNSVISNEHVSKRAKTIHPCEKCERVFKREFHYKRHVASCHEKVVTRSDSEDCAESINAESSLKTLKTKLVEMDESNVTDEGSETDNKSVDWEAICNKSRRRRLQSYPCMHCDYTAKKKKLLELHNVEHHPELSIKKQSKKPRSIDKETVKRARMEVNGRVYYHCNECGKNLYSPYTFSWHMRIHTGERPFTCHLCGKQFRVNQGLARHLRETHAGIKKFPCDICGRMFSTKRNAEDHRRIHTGERPYVCNICGKAFKQKASLFVHNRTHTDFFPFKCSYCDQGFRTRPPLMVHITKHTGEKPHACDICGRRFRIKYELKRHRLIHFDEKPWQYSCQGAKLVPKCRLRKLPIEGETQRLEVVNCGNKVIALNNKERSVKKFNKNKIIEDEASSKEKFNRSIETIDIEQKSKVQTEPEEVSSKSEDEANLETTRGLLKAPNEKSKKECSKTVKTRVKRTSEQRAELARSQISANGSTHYKCRECGKFLSTAYNFLTHLTVHTGERPYTCHICGKSFSAASGLNRHVRDVHNGVKNFACDICDRKLATKIARDEHRRTHTGERPHVCETCGKCFKQKASLHVHKRFHAKDLTYSCSLCDRGFRRKQELDKHILIHTGQKPYTCDMCGKHFRSKGCISRHKRTHGSQKLHRCSACGAGFSQERYLKNHTRNMHKTARTPT
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -