Basic Information

Insect: Calameuta idolon
Gene Symbol: SCAND3
Assembly: GCA_030142285.1
Location: JARQSV010000355.1:1987031-1989874[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 15 0.00075 0.054 14.0 3.3 1 23 354 376 354 376 0.97

2 15 0.00012 0.0086 16.5 1.1 3 23 384 405 382 405 0.94

3 15 1.4e-05 0.001 19.5 1.2 2 23 502 523 501 523 0.97

4 15 7e-06 0.00051 20.4 1.8 1 23 529 551 529 551 0.98

5 15 7.8e-05 0.0057 17.1 0.3 1 23 557 579 557 579 0.98

6 15 1.2e-06 8.4e-05 22.9 1.4 1 23 595 617 595 617 0.98

7 15 8.3e-06 0.0006 20.2 1.2 3 23 625 645 623 645 0.98

8 15 7.5e-06 0.00055 20.3 1.9 1 23 651 673 651 673 0.98

9 15 0.0038 0.28 11.8 0.3 1 23 679 701 679 701 0.99

10 15 7.2e-06 0.00052 20.4 0.3 1 23 707 730 707 730 0.94

11 15 2.1e-05 0.0015 18.9 1.3 1 23 736 758 736 758 0.98

12 15 0.00046 0.034 14.7 4.7 1 23 764 786 764 786 0.98

13 15 7e-06 0.00051 20.4 0.2 1 23 792 815 792 815 0.96

14 15 1.9e-05 0.0013 19.1 0.8 1 23 821 843 821 843 0.95

15 15 4.1e-06 0.0003 21.1 4.5 1 23 849 871 849 871 0.99

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	15	0.00075	0.054	14.0	3.3	1	23	354	376	354	376	0.97
2	15	0.00012	0.0086	16.5	1.1	3	23	384	405	382	405	0.94
3	15	1.4e-05	0.001	19.5	1.2	2	23	502	523	501	523	0.97
4	15	7e-06	0.00051	20.4	1.8	1	23	529	551	529	551	0.98
5	15	7.8e-05	0.0057	17.1	0.3	1	23	557	579	557	579	0.98
6	15	1.2e-06	8.4e-05	22.9	1.4	1	23	595	617	595	617	0.98
7	15	8.3e-06	0.0006	20.2	1.2	3	23	625	645	623	645	0.98
8	15	7.5e-06	0.00055	20.3	1.9	1	23	651	673	651	673	0.98
9	15	0.0038	0.28	11.8	0.3	1	23	679	701	679	701	0.99
10	15	7.2e-06	0.00052	20.4	0.3	1	23	707	730	707	730	0.94
11	15	2.1e-05	0.0015	18.9	1.3	1	23	736	758	736	758	0.98
12	15	0.00046	0.034	14.7	4.7	1	23	764	786	764	786	0.98
13	15	7e-06	0.00051	20.4	0.2	1	23	792	815	792	815	0.96
14	15	1.9e-05	0.0013	19.1	0.8	1	23	821	843	821	843	0.95
15	15	4.1e-06	0.0003	21.1	4.5	1	23	849	871	849	871	0.99

Sequence Information

Coding Sequence: ATGGCAACTGACTGGATGACAGAAAAGATTTCAATGAAGAGTGTGCTAAGTCAAGTTCTGAATGGAAGAACTGAGTCAGATTTTATATCTGTCAAACAAGAAATGGAACTGTTTGATGACACTTTATGTCCTAAAACACAAGATCAATGCATTgataaacaaaagaataatgaaactGATGCAGTGCCATCTTCTTCAAAAGCACAACCAGATAGTACTTTGCGGTCACATAATGGAGAATGTAACACAGATGTTTCACCTGCACTTCTTAACGAAAGAACTTTCGTATTAGCAAGTGTCATAAATCAAGACTCATTATGTAGAGGCCAAATTGATGTAATGGAGATACAAGCTGAAGAAGAACacaattacaaatatttgttcatTTATGAAGATCagttttctaaatttattgtTCTCAAAGCTTTAAGAACTAATACTATCAAAGAAGTCACATTGGAACTCTTTGATGTACTAACCATCATTGGAGCACCGCGAATTTTGCAAAGTGGTAATGGTCGCGAATTTACTGAACATGTGGTGCGCGAATTACGTTCACTTTGGACGAACCTTGCAATAGTGCATGGAAATGTGTCAAAATGTGATGAAAGCAGTAAGAGAGATTATCAAAAACTTATAAAATCATGGCTCATAACAAATCCATCAAAAGTCTGGTATCAAGGTCTTAAATTTATACAGATCCTTGAAAATACAACTTTTCCATCCAAGGATGGTAAAATTCCATATGATTTACTATTTGGCCGTAACGTTCACAAGGTATGTGAGAATGGGAGTCTTTCTAAGGaagttatgaataaaatttggagTGAAGAGCAATTGTACGAGCATCTCAAGGAGAATGGAAGCATCTCTCTTGATATTGAATTTGGGGACAGCCCAGTTAAATCACCAAGAAATAACAGAAGTACAAATGGTTTTAATTTTGTGAATGTAAAAAGTGAAATGTCACTGAGCACAAATCAAATAGAAGATTCGCAATCCGATGAAGAAACTAGCACAGGTGATAGGTTACAGACACAAAACACAGATAAGTATCTGTTTAAGTGCAAAATCTGTCAGAAACAATATATGAAGTTAGGTCATTTAAAGAATCATGTAAAAGCACATGTGAAAGCAGGTCGACTTGATTGTACTATTTGCCACAAAACATTCCGTCTTCCAAGTCTATATGATAAGCATATGAATGAAGTTCACAGCCAAGAAAAAATCTTCAGCGATGAtgcttttcattttgcaaAGAGATTGGATACGGATGACATTTCACCAGAAAAATCCGAAAATAAAAACGAGAAGTTAGAAACTAGATCAGAAGAGAATCCTTTGGAAATAACCAAACGCATAAGTCCTGAGAAAAAAGATAGCATGCTTCTCTGTATCTCCAATAAAAGTCACAAAAAAAGCCTTAAACGCACAAACGCCCTAACCAGAAGAAGAGTTTCCAAAGAGAATCGTCTAACTAAAGTGAATGGGGACCCATTGCTCGAGTGCACATATTGTCAACAAAAGTTTGACTTTCCAAGTGTCTTAAAACGACACATGCGGTCTCATACAAATGAAAGACCTTACGTTTGTGAAGTCTGCAACAAGAGTTTCAAGCAGTTAGGACATCTGAGTCAGCATTCTTTGACACATACGGACTACAGGTCTTTTCAATGTGCAATTTGCGGAGTAAAATTTGAGTCTCTGGACAGCTTGAAGAATCATTCACAAAGTCATAAAGGAGAATCGGTTGTATACCGACCGAAGGAGATTTATCGCCTCTTCGAATGCGACAACTGTAAAAAGGTGTTTACAACAAAAAGTGTCCTAGAACGTCACATATTTACTCATACACATGAGCGTCAATTTGGCTGTAAAGTATGTGGAAAAAGATTCAAACAAGCAGGTCACGTTAAGTCCCATATGTTGATTCATACAGGAGAACGTAAATTCGAGTGTACTATATGTTCAAAACGTTTTAGCCTATCAAATTCTCTCAAgaaacatatgtatgtacacaatGGCGAAAAGCCTTATCAATGTGACGTATGTGGTGCCAGGTTTCTTGAAAAGCGATATCTCAATGGACACTTAATGACCCACACAAATGAGCGTCCATTCTCTTGCAAAATATGTGGTAAAAGGTATACCCTTGCAGATACCCTGCGGCGTCATATAAGTGCAGCTCACGAGGATGGCAGAACCTACCAGTGCGAAATCTGTGCAAAAATGTTTAAGCAGCTTGCGCATTTATCAGTTCACAAGAAAGTGCACAACGATGAGCGACCATTTCAGTGTCACCTTTGTGAGAAGAATTTCAAGCACAAGAATGTCCTCAAGTCGCACCTGGCGATACACGCTAATGTAAGACCGTTCGAGTGTGACGTTTGTAAAGCCACCTTTGTGAGAAAAACTAATTTACAAACTCACATAGCATCGGCTCATATGAATGAACGTCCTTATGCATGTAAGATATGCGATAAGCGCTTCAAGCAAATCAGCCATTTGAATGGTCATGTTGTGGTACATAGTAATTCTATGCCATATCAGTGTGACTTTTGTGACCGCCGGTGTAACAGGCTAGATAATCTGAAAAAGCATATGCGTCTGCATACTAAAAATAAGGAGTAA
Protein Sequence: MATDWMTEKISMKSVLSQVLNGRTESDFISVKQEMELFDDTLCPKTQDQCIDKQKNNETDAVPSSSKAQPDSTLRSHNGECNTDVSPALLNERTFVLASVINQDSLCRGQIDVMEIQAEEEHNYKYLFIYEDQFSKFIVLKALRTNTIKEVTLELFDVLTIIGAPRILQSGNGREFTEHVVRELRSLWTNLAIVHGNVSKCDESSKRDYQKLIKSWLITNPSKVWYQGLKFIQILENTTFPSKDGKIPYDLLFGRNVHKVCENGSLSKEVMNKIWSEEQLYEHLKENGSISLDIEFGDSPVKSPRNNRSTNGFNFVNVKSEMSLSTNQIEDSQSDEETSTGDRLQTQNTDKYLFKCKICQKQYMKLGHLKNHVKAHVKAGRLDCTICHKTFRLPSLYDKHMNEVHSQEKIFSDDAFHFAKRLDTDDISPEKSENKNEKLETRSEENPLEITKRISPEKKDSMLLCISNKSHKKSLKRTNALTRRRVSKENRLTKVNGDPLLECTYCQQKFDFPSVLKRHMRSHTNERPYVCEVCNKSFKQLGHLSQHSLTHTDYRSFQCAICGVKFESLDSLKNHSQSHKGESVVYRPKEIYRLFECDNCKKVFTTKSVLERHIFTHTHERQFGCKVCGKRFKQAGHVKSHMLIHTGERKFECTICSKRFSLSNSLKKHMYVHNGEKPYQCDVCGARFLEKRYLNGHLMTHTNERPFSCKICGKRYTLADTLRRHISAAHEDGRTYQCEICAKMFKQLAHLSVHKKVHNDERPFQCHLCEKNFKHKNVLKSHLAIHANVRPFECDVCKATFVRKTNLQTHIASAHMNERPYACKICDKRFKQISHLNGHVVVHSNSMPYQCDFCDRRCNRLDNLKKHMRLHTKNKE

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00298497;
90% Identity: iTF_00298497;
80% Identity: -