Cido015616.1
Basic Information
- Insect
- Calameuta idolon
- Gene Symbol
- -
- Assembly
- GCA_030142285.1
- Location
- JARQSV010004391.1:761-1350[+]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 1 6.1e-11 6.4e-08 32.3 0.0 4 39 57 91 57 96 0.91
Sequence Information
- Coding Sequence
- ATGACAGCAACACGAAAGgtgaaaaaggaaatcaagaacaaaaaaagcaagaaaaaattagaCGGTACGGTGAAAAAGAGTTCTAAGCGCAAGAATGTTGTTGTGAAAAAAGAGGCAAAAGTGgtcaagaagaaagaaaaagtgaaaagaaagcTGTATTCTACTATTGATCTACAGAGAGCTGTAAATGCAGTTAATCGTGGCACGTCTGTTCGAAAAGCTGCACTTAAATATAGCGTACCACCAACATCTATCCACAGAGCTGTGAAGAACCCGGAGCAATCAAACTTAAAGGCTGGCCCTGCTCCAATTTTGTCAATAGAAGTAGAGACTGACATTGTAAACTGGATTTTGTATCGAGCTGAGAAAGGATATCCTATCACCAAAACTGAATTGCTGGACAGCGTGCAAAGTTATATACGCAATCTTGGAGATGAAATCCCTAAGACTCCGTTCACTAATGACAGACCTGGCCGCCACTGGTTTGAAAAGTTTCGACTTCGACATCCTGAAATAACCATCAGGACTCCACAGCATCTTACTATGACACGTGCATGTGTGACTGAAGAAGATTTGAGAGGATGGTTTTC
- Protein Sequence
- MTATRKVKKEIKNKKSKKKLDGTVKKSSKRKNVVVKKEAKVVKKKEKVKRKLYSTIDLQRAVNAVNRGTSVRKAALKYSVPPTSIHRAVKNPEQSNLKAGPAPILSIEVETDIVNWILYRAEKGYPITKTELLDSVQSYIRNLGDEIPKTPFTNDRPGRHWFEKFRLRHPEITIRTPQHLTMTRACVTEEDLRGWF
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01474604; iTF_01035348; iTF_01036123;
- 90% Identity
- iTF_01035348;
- 80% Identity
- iTF_01474604;