Basic Information

Insect: Calameuta filum
Gene Symbol: lola
Assembly: GCA_031763695.1
Location: JARPRI010000006.1:350739-357600[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 13 0.00084 0.058 13.9 4.1 1 22 27 48 27 48 0.95

2 13 2.7 1.9e+02 2.9 0.9 1 11 56 66 56 70 0.83

3 13 0.0042 0.29 11.7 7.2 1 20 91 110 91 111 0.93

4 13 0.023 1.6 9.4 2.4 1 23 120 143 120 143 0.91

5 13 6.7e-05 0.0047 17.4 0.1 1 20 207 226 207 228 0.95

6 13 0.00077 0.054 14.0 1.4 1 21 251 271 251 272 0.95

7 13 0.6 41 4.9 0.3 1 13 280 292 280 293 0.90

8 13 0.017 1.2 9.8 1.7 1 21 344 364 344 365 0.95

9 13 0.016 1.1 9.9 0.6 1 23 376 399 376 399 0.96

10 13 7.1 4.9e+02 1.6 8.2 1 23 406 429 406 429 0.97

11 13 0.0068 0.47 11.1 0.1 1 21 578 598 578 599 0.96

12 13 0.56 39 5.0 0.1 1 19 666 684 666 687 0.78

13 13 0.0074 0.51 10.9 0.6 1 21 697 717 697 721 0.91

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	13	0.00084	0.058	13.9	4.1	1	22	27	48	27	48	0.95
2	13	2.7	1.9e+02	2.9	0.9	1	11	56	66	56	70	0.83
3	13	0.0042	0.29	11.7	7.2	1	20	91	110	91	111	0.93
4	13	0.023	1.6	9.4	2.4	1	23	120	143	120	143	0.91
5	13	6.7e-05	0.0047	17.4	0.1	1	20	207	226	207	228	0.95
6	13	0.00077	0.054	14.0	1.4	1	21	251	271	251	272	0.95
7	13	0.6	41	4.9	0.3	1	13	280	292	280	293	0.90
8	13	0.017	1.2	9.8	1.7	1	21	344	364	344	365	0.95
9	13	0.016	1.1	9.9	0.6	1	23	376	399	376	399	0.96
10	13	7.1	4.9e+02	1.6	8.2	1	23	406	429	406	429	0.97
11	13	0.0068	0.47	11.1	0.1	1	21	578	598	578	599	0.96
12	13	0.56	39	5.0	0.1	1	19	666	684	666	687	0.78
13	13	0.0074	0.51	10.9	0.6	1	21	697	717	697	721	0.91

Sequence Information

Coding Sequence: atgctGATTTCAGACTCCACAGATGGAGCCACTGAAAGCGGGACGAAGTGCACAAGAAAAGCGCGCGGTCAAGGCtactttttttgcaataaatgCGGAAGGCGATATCATCAGGAAAAAACACTGAAGAGACATCTGAGAAAAGAGTGCGGAAGAGAACCGACTTTTCAATGCTCCTATTGTCCCTATAAATCTACGTATAACATTGATGCGCACTACGGGTCGCTCGGGAACTTCATCTGCGTCCAGACGACAGACGACCAACAGAAACACGCTTGCAGCGCCTGCGGGAAAACTTACAAACACAAACACCATTTGAAAAGGCATCACGACTTTGAGTGCGGAATCGATCCTAAGTTCAAGTGTGCATTTTGTCCTCACAAAACAAGATACAAGAACAGCTTGATGAAGCATATTGTCGCGCGACATCACAAGCTCTGGGGTGTCGCGTCGCAGTTTGAAAACAgtCAACATTACAGTCCGGCCAATTGGACCGTGGCCACCTTGCCATCGACCTCTCGCGAGGATCATTATTTTCGTCAGCTTCGTTCGATGAGTAAGGACGGATCCTTATCGGATAaggagaaatcgaaaaaacgCGGTTGGGGCCCACGAAAATATCGTTGCGCGGATTGCGGCAGGACTTTTGCTCTTGCCGCGTCCTTGACACGTCACAGGTCCTTGGAGTGCAGCGGACAGTCGTCTCGGACGTCGAAGAGAAACGAATCCTTAGTCAAGAAATCAAAAGATCACGAGTGCAACAGATGCGATCGTtcctataaatttttgacttCATTATGGCGTCATCAGAATTTGGAATGCGGCGTGGAGCCGAAATTTGCATGTCCAGTCTGCCACGTTAGGTTTGCTCAGAAAAAGATTCACGGATGGAACGTCAGAGGATACCTGCACAACTACGGCTCAATGGAAAACGCCGAAGGATCCGTTCAGGCGTTAGGCAGTATGGAAATAGGAGATTTCAAACACCTGGATAATAAATCGATAACATTTGAGCCCAGCTACAAAAGACACGTCTGTAGCTACTGCAAGAAAGTCTACCTGCTCAAGAACCTCCTGAAACGGCACATGCAATATTCCTGCGAGATGATACCGAAAAGTGCACAATTCGCGTGCACTTTCTGCCCCTACAAAAGCATGTACAAAGCAAACATGGAAAGACACGTGAGAAACGTCCACGACGCCGGTGCGATGAAATTCCACTGTGAGCTCTGTAACTTTCGCAGCAACTACACATTCTGCGTCCGTCGTCACATGAAAACCTTCCACAACCGTCCTGGTCGTACAAAGCCATGTTCGGATTCGATGCCAGCAACGTTATTATCCAGCGGAACTCGACGCGTGTCAATTGCGACGTCCGAGGACGGACGTTTCAGTGCACGGACTGTGGGAAGTCTTATGCGGTTCAAAGGTCACTCTGGAGACATCGTAAATTCGAATGCATCAATTCACGGCCTAAATTCACCTGCGAGCTGTGCCCGTACAAGAGCTCGCACAAGTGAGTTCCCTGTCGAGAATTTCGAAGACGAGGACGAGTGCCTGACGaatgacgaggaggaggaggagcagcTGTCTAAGGAAAGTTTTGTGAAAGTCATCAAAACCCCGATAACGAACGTCAAGGGAATTTCGGAATTATTCGAAGTATCGAAGGAGggtgaaattatattaaagtctaatgaaaatcatattcTCACCCTGAAGGATCCGACCTACGAGTGCGAGTCCTGCGGGAAAACTTACGCCTGGGCTACGTCCTTGAGCAGACACCGTAGGGAATGTcaagagaggaagaaattaCGTAAGCAAACCGAAGAGATTAAAAGCGACGAAGAAATCATAAGAGATTCAATAGAGAATCCAGGCTCTTCGATATCGTCACCTCGCGAAGACGAAGAAACGGTCCAGGAAGATGCTGTGGCCAAGTACAAGCCACGATTTCGCGAATTGCAAAAATACGTATCGAAAGACGGCGTGTACTCGTGTTGGGACTGCGGCAAGTACTATCTGTGGGCATCTTCTTTGTCCAGGCACAGGACCATCGAGTGCGGAcctaaaaataagaaaagattcGTCTGCAATCTTTGCAACTATCGTACAGGATACAAAGGAAATTTTGTGAGACACCTAAAAGCACCAAGGCACATAATGCACAGCAGTttggaaaagaagagaatgcAAATTGCTacaatgaagaagaagaagaagaacatcAGCGAGGAGGCTGACGAAGAGTTAGAAGAGACAGCTTAA
Protein Sequence: MLISDSTDGATESGTKCTRKARGQGYFFCNKCGRRYHQEKTLKRHLRKECGREPTFQCSYCPYKSTYNIDAHYGSLGNFICVQTTDDQQKHACSACGKTYKHKHHLKRHHDFECGIDPKFKCAFCPHKTRYKNSLMKHIVARHHKLWGVASQFENSQHYSPANWTVATLPSTSREDHYFRQLRSMSKDGSLSDKEKSKKRGWGPRKYRCADCGRTFALAASLTRHRSLECSGQSSRTSKRNESLVKKSKDHECNRCDRSYKFLTSLWRHQNLECGVEPKFACPVCHVRFAQKKIHGWNVRGYLHNYGSMENAEGSVQALGSMEIGDFKHLDNKSITFEPSYKRHVCSYCKKVYLLKNLLKRHMQYSCEMIPKSAQFACTFCPYKSMYKANMERHVRNVHDAGAMKFHCELCNFRSNYTFCVRRHMKTFHNRPGRTKPCSDSMPATLLSSGTRRVSIATSEDGRFSARTVGSLMRFKGHSGDIVNSNASIHGLNSPASCARTRARTSEFPVENFEDEDECLTNDEEEEEQLSKESFVKVIKTPITNVKGISELFEVSKEGEIILKSNENHILTLKDPTYECESCGKTYAWATSLSRHRRECQERKKLRKQTEEIKSDEEIIRDSIENPGSSISSPREDEETVQEDAVAKYKPRFRELQKYVSKDGVYSCWDCGKYYLWASSLSRHRTIECGPKNKKRFVCNLCNYRTGYKGNFVRHLKAPRHIMHSSLEKKRMQIATMKKKKKNISEEADEELEETA

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00294024;
90% Identity: iTF_00297864;
80% Identity: -