Basic Information

Insect: Calameuta filum
Gene Symbol: -
Assembly: GCA_031763695.1
Location: JARPRI010000516.1:91112-92275[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 6 3.4e-05 0.0023 18.3 0.1 3 23 147 167 146 167 0.97

2 6 6.2e-06 0.00043 20.6 3.5 1 23 173 195 173 195 0.98

3 6 1.8e-06 0.00013 22.3 2.7 1 23 201 223 201 223 0.99

4 6 0.00068 0.047 14.2 0.3 1 20 229 248 229 251 0.93

5 6 5.1e-06 0.00036 20.9 0.7 2 23 258 279 257 279 0.97

6 6 9.3e-08 6.5e-06 26.4 0.5 1 23 285 308 285 308 0.98

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	6	3.4e-05	0.0023	18.3	0.1	3	23	147	167	146	167	0.97
2	6	6.2e-06	0.00043	20.6	3.5	1	23	173	195	173	195	0.98
3	6	1.8e-06	0.00013	22.3	2.7	1	23	201	223	201	223	0.99
4	6	0.00068	0.047	14.2	0.3	1	20	229	248	229	251	0.93
5	6	5.1e-06	0.00036	20.9	0.7	2	23	258	279	257	279	0.97
6	6	9.3e-08	6.5e-06	26.4	0.5	1	23	285	308	285	308	0.98

Sequence Information

Coding Sequence: ATGCAGGTGGATTGGTACGCAGGATATGAGCAGCTTGTCAAGCGCAACCTGACTCTGCTCCCTCATCAGCAAGCCGCGCAGCAACaggaacagcagcagctggCCCAGCCGCAGCAGGCCGACATCATGACGTCCATGTTCGAGCAACAGATCAAGAGCGAGCCAATGGGTTTTTACTCAGTAGCCTCAAGTCGCTCTGATGGTTCCAACTCCATGGTGAACCTCTCTGATGATCGAGAGGACCTTTCGCAGCAGGAGGGTCATCTACAgccacagcagcagcagggaATGCAGCCTCATCAGCAGCAAGCGCAGCAGCAAAACCAGCAGCAGACTCAAAGTCAGCAGCAAGGTCAGAATGTACAGCAGACTACGCCAACACGTCAGTCTACGGGGCAGCAGACAGTAAAAGAGGGCTCACGCTCTAAGCCGCAGGCTTGTAAAGTCTGTGGAAAGGTACTGTCCTCCGCATCATCATACTATGTTCACATGAAGCTGCACTCTGGCAACAAGCCATACCATTGTACGGTCTGTGAGGCAAGCTTCTGTCGCAAGCCATATCTGGAAGTTCACATGCGAACGCATACTGGTGAACGACCGTTCCAGTGCGAGCTGTGCTTGAAAAGATTCACGCAGAAGAGTAGCTTGAACACCCACAAGCGTGTGCACACAGGTGAGCGACCGTACGCTTGTGACATATGTCAAAAGCGTTTTGCTGTCAAGAGCTACGTAACTGCACATCGTTGGAGCCATGTCGCAGAGAAACCTCTGGTCTGCGACAGATGTTCCCTGACCTTCACCTCCAAGAGCCAGTTTGCGATTCACATTCGCACGCACACTGCAAGCACCACTTATGAGTGCAACATCTGCGGCCGTACCTTCGTGCGGGACAGCTATCTTATACGACACCAGAACCGGGTCCATCGTGACATGAATCAGGCAAGTTCCAATCACAATCCAGCAACTCCTCAGAGTACTGGTGGCGGTACGCCAGGCACCGGCTTCGAGAGTCCTGTGTGCGACCTGCGCTATAGCGAGGGTCCCTCGTCTCTCGATGGCCTTGGTGGCGGCAAGGGCGGCATCGCCGCTGAAATCGCCAGCCTCGCCAAGCAGAACAGTCTAcaacttcctcttcctctgcTACATCCGCAGACTACCAACTAG
Protein Sequence: MQVDWYAGYEQLVKRNLTLLPHQQAAQQQEQQQLAQPQQADIMTSMFEQQIKSEPMGFYSVASSRSDGSNSMVNLSDDREDLSQQEGHLQPQQQQGMQPHQQQAQQQNQQQTQSQQQGQNVQQTTPTRQSTGQQTVKEGSRSKPQACKVCGKVLSSASSYYVHMKLHSGNKPYHCTVCEASFCRKPYLEVHMRTHTGERPFQCELCLKRFTQKSSLNTHKRVHTGERPYACDICQKRFAVKSYVTAHRWSHVAEKPLVCDRCSLTFTSKSQFAIHIRTHTASTTYECNICGRTFVRDSYLIRHQNRVHRDMNQASSNHNPATPQSTGGGTPGTGFESPVCDLRYSEGPSSLDGLGGGKGGIAAEIASLAKQNSLQLPLPLLHPQTTN

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00756888;
90% Identity: iTF_00232162;
80% Identity: iTF_00292465;