Basic Information

Insect: Calameuta filum
Gene Symbol: Snai1
Assembly: GCA_031763695.1
Location: JARPRI010000072.1:117915-121185[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 13 9.5 6.6e+02 1.2 0.1 1 23 221 247 221 247 0.87

2 13 0.00014 0.01 16.3 0.2 1 23 252 274 252 274 0.95

3 13 1.7e-05 0.0012 19.3 1.2 1 23 282 304 282 304 0.98

4 13 6.7e-06 0.00047 20.5 0.2 2 23 312 333 311 333 0.97

5 13 6.8e-07 4.7e-05 23.6 0.8 1 23 339 361 339 361 0.99

6 13 3.5e-05 0.0025 18.2 2.3 1 23 368 390 368 390 0.98

7 13 8.9e-06 0.00062 20.1 0.6 1 23 396 418 396 418 0.95

8 13 1.4e-05 0.00094 19.5 0.2 1 23 424 446 424 446 0.98

9 13 7e-07 4.9e-05 23.6 1.2 1 23 452 475 452 475 0.96

10 13 2.7e-06 0.00019 21.7 0.6 1 23 481 504 481 504 0.96

11 13 8.2e-06 0.00057 20.2 2.9 1 23 510 532 510 532 0.99

12 13 9e-05 0.0063 17.0 0.4 1 23 538 560 538 560 0.94

13 13 0.00028 0.02 15.4 0.1 1 23 566 590 566 590 0.94

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	13	9.5	6.6e+02	1.2	0.1	1	23	221	247	221	247	0.87
2	13	0.00014	0.01	16.3	0.2	1	23	252	274	252	274	0.95
3	13	1.7e-05	0.0012	19.3	1.2	1	23	282	304	282	304	0.98
4	13	6.7e-06	0.00047	20.5	0.2	2	23	312	333	311	333	0.97
5	13	6.8e-07	4.7e-05	23.6	0.8	1	23	339	361	339	361	0.99
6	13	3.5e-05	0.0025	18.2	2.3	1	23	368	390	368	390	0.98
7	13	8.9e-06	0.00062	20.1	0.6	1	23	396	418	396	418	0.95
8	13	1.4e-05	0.00094	19.5	0.2	1	23	424	446	424	446	0.98
9	13	7e-07	4.9e-05	23.6	1.2	1	23	452	475	452	475	0.96
10	13	2.7e-06	0.00019	21.7	0.6	1	23	481	504	481	504	0.96
11	13	8.2e-06	0.00057	20.2	2.9	1	23	510	532	510	532	0.99
12	13	9e-05	0.0063	17.0	0.4	1	23	538	560	538	560	0.94
13	13	0.00028	0.02	15.4	0.1	1	23	566	590	566	590	0.94

Sequence Information

Coding Sequence: ATGACAGCTGATTCTGACAAGGATTGTACACACTGTTTGATATGTAATAGTAAAGTTGGCGTTTCCACTAGGAACAGTGTTAGAATCTTTAGTGGGAATTCAGTAACAGCATCAGAGAAACCCCTTGTTGATACGATATGTTCTGTTTTGGAATTGGAATTAACTGAACAGAATACACACTCTCtagttatttgtaaaaaatgctataaattatttaatgaggtgGATGAATTAGAGACCAGATTGTCAGAAATAAggcttgaaatatttactaatTATAAAAGAACTATAGCAAAAATTTCTGGTGTTCCTCAAGGTGATGACGAATGTAACGATCATGACTATGTTGACAACTCCGAATTGCAAAATACAGGTGATCCTACTGTAAAGTTTAGtcagaaattgaagaagaagTGTGTGGAAATTAAAACCTCATTGAGCCCTGAAAATGTTTTGCTGgaagagaaagaagaccACGAAGagcaagaggaagaagaacTACTAGAACAAGTCGAAGAACCAGAACAGATCATTATAAAAGTTGAAGCATTATTGGATCAAAAAGATCCTGATGATAAATCAGAATTTAGAAAGAGCAAAATGAACATTAAGCAAGACAACATGCAAGATCAGCAATTGGTTTTAAGAAATGACAACGAGTATACTTGTCTTTTATGCCCGGACGAGGAAAAATTCACTGGCGATCCAAAGACGATAATTAGCCATCTGAAAACTATCCATGACGCTCGTCTTTACATTTGTGACATTTGTGGAATGGTCTTTCGTAAACGAAACAAACTCTCTGTTCATCTGGATGATCATGTAGCCAAGGAGGAAGGTGATTTCCAGTGCGAGATATGCAACAGGATATTTAGTAACTTACGACTGTTTAGAATTCACAAGCGTATCCACTATCCACAAGCCAAATCCTGGCCCTGCGAAACCTGTGGCAAGAGATACAGctcgCGAAATTTGTTGGAGGAACATATTAATACACATACTGGGGTGCGACCGTACGTGTGTGAAACATGCGGCAAGGATTTCGCATCTAAGTATACGTATAAGGCGCACATAAAAACGCATGAAATTCGTCCAAGGCCCTTTGAATGTACTCAATGCAATAAGACATTTCTGAGCCAGCAAAATCTTAATCAGCATGAAAGGACGCATAATGGCGTTAAGGAATATATATGTCATCAATGTGGCAAAGCATTTGGTTCGCCACACAATTTGGAAGTGCATAATATTGTGCACACTGGCTACAAGCCCTACATATGCAGAATGTGCGGCAAGGCTTTCGCAAGAAAAGCCGAGATAAGAGATCATGAAAGAACTCATACTGGCGAAAAACCGTACCAATGTGAATTTTGTGGAGCGACGTTTAGTCAAAGGTCGAATTTGCAATCACACAAACGAGCAACGCACTATAATGACAAGAGATACAAGTGCAATGATTGCGGAAAGGGTTTTAAAAGACGTAGACTTCTGGACTATCACATAAAGGCCGCACACACTGGTGAAAGACCGTTTAAATGTGAAACTTGTACTGCTACTTTTGTATATCCAGAACATTTTAAGAAACACATGAGAATCCACACAGGGGAGAAACCATATCTCTGCGAAGTCTGCGGTAAAGCTTTTAATAGCAGAGATAACAGAAACGCTCATCGTTTTATACATAGTGACAAAAAACCGTATGAATGTTTAGTTTGTGGTATGGGATTCATGAGAAAACCATTATTGTATGCACATATGCAAACGCAgGGACACTTGAACGATACTATCGTCGTTAATCAACCTAGATTAACTACAGAGGATGATCAATTGATAGCCATTCCCGATGAAGATGTAGAACTTTTAATGGAGGGTGCAGATAACGAGCAggTGGAAGAAACTGAACTTTATATAGCGGAATTGAAGGACCATGTTATCATTCAGCAGGGCGAGGAACAGATGTATCATGAAGAAAATGTCCTAAGTATTCCAGCCGAAGATGCAATCGGTGAAGATGGTGTAGAGCATCTTGTCGTAGACGGCCAGATCAACTTTACTGCAACGGAAGTAATGGAATGTAAAACAGAAGGTTCCGAACAAGTTGAGGAAGTTTACGGGTATAATGAGAGCGAGGATGGGGAAACGATAGTTGTGCCAGCATCTTCAGAGTACAAGGAAATGGTTGCAGATTCCAAAGGTGCAGTTCGTCTAGTTCAAATAAGAATCCCCTCATCGTCGAATGGGGAAGGTCGCAGTTGGTTGAACATAGTACAAAATACATGA
Protein Sequence: MTADSDKDCTHCLICNSKVGVSTRNSVRIFSGNSVTASEKPLVDTICSVLELELTEQNTHSLVICKKCYKLFNEVDELETRLSEIRLEIFTNYKRTIAKISGVPQGDDECNDHDYVDNSELQNTGDPTVKFSQKLKKKCVEIKTSLSPENVLLEEKEDHEEQEEEELLEQVEEPEQIIIKVEALLDQKDPDDKSEFRKSKMNIKQDNMQDQQLVLRNDNEYTCLLCPDEEKFTGDPKTIISHLKTIHDARLYICDICGMVFRKRNKLSVHLDDHVAKEEGDFQCEICNRIFSNLRLFRIHKRIHYPQAKSWPCETCGKRYSSRNLLEEHINTHTGVRPYVCETCGKDFASKYTYKAHIKTHEIRPRPFECTQCNKTFLSQQNLNQHERTHNGVKEYICHQCGKAFGSPHNLEVHNIVHTGYKPYICRMCGKAFARKAEIRDHERTHTGEKPYQCEFCGATFSQRSNLQSHKRATHYNDKRYKCNDCGKGFKRRRLLDYHIKAAHTGERPFKCETCTATFVYPEHFKKHMRIHTGEKPYLCEVCGKAFNSRDNRNAHRFIHSDKKPYECLVCGMGFMRKPLLYAHMQTQGHLNDTIVVNQPRLTTEDDQLIAIPDEDVELLMEGADNEQVEETELYIAELKDHVIIQQGEEQMYHEENVLSIPAEDAIGEDGVEHLVVDGQINFTATEVMECKTEGSEQVEEVYGYNESEDGETIVVPASSEYKEMVADSKGAVRLVQIRIPSSSNGEGRSWLNIVQNT

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00770536;
90% Identity: iTF_01395281;
80% Identity: iTF_00255254;