Cfil007194.1
Basic Information
- Insect
- Calameuta filiformis
- Gene Symbol
- -
- Assembly
- GCA_030142265.1
- Location
- JARQSU010000398.1:1378081-1381061[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 11 5.5 4.2e+02 1.8 0.1 1 19 380 398 380 403 0.75 2 11 1e-05 0.00078 19.9 2.7 1 23 485 507 485 507 0.99 3 11 0.0022 0.16 12.6 1.0 2 23 515 536 515 536 0.97 4 11 0.0069 0.51 11.0 0.2 2 23 542 563 541 563 0.97 5 11 3e-07 2.2e-05 24.7 2.4 1 23 597 619 597 619 0.98 6 11 1.8e-06 0.00013 22.3 1.2 1 23 625 647 625 647 0.98 7 11 0.16 12 6.7 0.7 5 23 661 679 660 679 0.96 8 11 1.5e-05 0.0012 19.3 1.0 1 23 686 708 686 708 0.97 9 11 0.00025 0.018 15.5 0.7 1 23 714 737 714 737 0.96 10 11 0.78 58 4.5 8.7 1 23 743 765 743 765 0.82 11 11 3.1e-05 0.0023 18.4 2.4 1 23 771 793 771 793 0.97
Sequence Information
- Coding Sequence
- ATGGTTAACCGAAGATGTTCCGCCAAAACATGTTTCAACGAATCAATTTCGAGACctgacttgaaatttttcccaTTCCCGAAAGCGGAACATGAcgCTCGTACTTGGGCTAAAGCTTGTGATAGACCTGAACTTATGAACAAGAGTTTAGATGTACTACGCCGATATGTTCTTTGCGCTGAACACTTTGAGGATCGTTGGTTCATTAATCCACCACACAATACAGCATTTATTAAGACAGCACTTCCGATACCAAcgatatttcgtaataatatcAAGGAGATTTTAGTTCATCaacgaaaaaatgtatcagTATCTAATGGTGATGCTGCTGCTACAAGTGATACAACGGAACAAACGGAAACTGAGAATATGACTATGACGCAAAATTGGAGATTCAGCATAGGAGCAGAATTCAATTCACAATCGgaagACCATTCTAATGAAGAGCAGAGGAATTTGGATTTAGTTATCAATGCTACTGAAGTTAATAAGGAAGATGACGCTCATAACTTCTGTAGACTATGTGCATGTTTAATACCAgctaatttattgaattctaTTTATGATACGCACATGAAtctaaagataaataaaatattaccaaacgagGCTCATGTATTCAAACATGATGGTTTGGCTGAGGAAGTATGCAAGTCTTGCATAGATAAATTGAACGTCTGCAATGATACAATACAACAATTTATAAGTGCAAATCAAAAGTTgagaaagttaaagaaaaatcgagagGAGGAGAGTATTTATCAGTCATTATCATCCGAAAGTACTTGTTGcacagaaaataatacagCTCATCcggaagaaaatttacaaatcaaTCCGAGTCAATACATGGATGTAAATTTGAATCATAAGTCTGATACCACCATTGTGGATATTAAAGaAGAGGATGGTGTTGATgtagaaaatgaattaaatattactgaAACATCTTTCCGAAAAACTAAAACTGCAAGTGTGAACTCACAGAAACCGTCGTTATCAAAGTCAATATCTTTAAATAACAGTAATAGCGAAGATACACTAGCAATATCTGAAATTACAAAACCAAAAAGAAGTACGTTATCGGAAGATCAATTGAATTCTAACAGAATCAAGTGTCCTGAAATTACAGTATTCAAATGCATGACATGCAATGAGGAATTCCTTGATAGAAATTCAGTAGTGGAGCACAGTATAGCAATCCACGCAATCAAAGGTAAAAAACACGAGGTAAAATATACCGtgactaagaaaaaaaatgagaagaggagacaattaaaaaagtatcacTGTACCAGCTGCCCCTTGGAATTTACTAATTGTCAAACTTATCGAGCTTGTATGAAGTGGCATCCATCAAGGAACAATATATGCGAATACTGCGACGGAGACTTCATATTACAAAGTAGATTAGAATCTCTCAACCGATGgcatttcaatgaaaaaccaTATCAGTGCAATATTTGTAACAAGTCATTCGTCTTCATTAACAGTCTTAAGCGTCATAAAAAGTCTCACATGGAGGACATGTCATTGCGTAAATGTAAAAGATGCAACAAGATATTTCCCACGATAGCTCTTATGCAAAGACACACTAAAGCCCATTACGAAAAGAGCGTCTCGTGCAATTTATGCGGAAAACTTTTGTCCTCTTCACAAAATGTACAATATCATCTGGCAACCCATAGCGAAGAACGACCATTTTCCCGTACGATTTGTTCAAAATCACTTAAAACCACCAGTAAATTAAGTTGTTGCAATAAAACAGATCGAGTAAATCATAGATTCGTGTGTAATTTATGCGACAAGAAATTCCGTATGAAATCGTTGCTTAAACAACACATGAATACGCATTTGGGTGAGATACCTTATGTTTGTGAAATGTGCGGTGCTCGATTCAACAGATATGGAAATCTTACTAAACATAGAAAACGGCATGCGGTATTATCAGCATTAGAATCATCATACACTTCTGATATTTGTCATAAGAATTTGAAAACTGCATTTGCATACAAGTATCACATGGCAAAGCACAGTGGAGAGCGAAAGCCATACTCTTGTGGTATTTGTGGGAAACATTTTAGGCAAATTGCACAGTTGAGAGTTCATAATAGATTGCATACTGGCGAGCGTCCTTATGCCTGCACTGAGTGTGATCAACGATTTCGGACAAAAGCAACAATGGATCAGCATTATATAACTTTGCATACAGATAATTATCCGCATGAATGTCCTTATTGCAATAAGCGTTTTAAACGGCTGCATTCATCAAACTGTCATAAGAAAACTCATACTGGAGAATGTCCACACGTATGTCGGATTTGTCATCGTGCTTTTGCACAAAAAGGTGATATGTTGAAacatatgaaaatacataaCCAGAGAGACTTAGACAGTCATTTTCGAAGAGCACATAATCAATCATCAAATAGTGACTTTCTTAAGGAATCAACTACCGACACGGAAGATTCAGAATGGATGACAGAAGTAGATTGTAGCGAGGAGGATATAACAAATGATTATCTAATGAGTGATGACGAATTGAGAACtgaatacaattaa
- Protein Sequence
- MVNRRCSAKTCFNESISRPDLKFFPFPKAEHDARTWAKACDRPELMNKSLDVLRRYVLCAEHFEDRWFINPPHNTAFIKTALPIPTIFRNNIKEILVHQRKNVSVSNGDAAATSDTTEQTETENMTMTQNWRFSIGAEFNSQSEDHSNEEQRNLDLVINATEVNKEDDAHNFCRLCACLIPANLLNSIYDTHMNLKINKILPNEAHVFKHDGLAEEVCKSCIDKLNVCNDTIQQFISANQKLRKLKKNREEESIYQSLSSESTCCTENNTAHPEENLQINPSQYMDVNLNHKSDTTIVDIKEEDGVDVENELNITETSFRKTKTASVNSQKPSLSKSISLNNSNSEDTLAISEITKPKRSTLSEDQLNSNRIKCPEITVFKCMTCNEEFLDRNSVVEHSIAIHAIKGKKHEVKYTVTKKKNEKRRQLKKYHCTSCPLEFTNCQTYRACMKWHPSRNNICEYCDGDFILQSRLESLNRWHFNEKPYQCNICNKSFVFINSLKRHKKSHMEDMSLRKCKRCNKIFPTIALMQRHTKAHYEKSVSCNLCGKLLSSSQNVQYHLATHSEERPFSRTICSKSLKTTSKLSCCNKTDRVNHRFVCNLCDKKFRMKSLLKQHMNTHLGEIPYVCEMCGARFNRYGNLTKHRKRHAVLSALESSYTSDICHKNLKTAFAYKYHMAKHSGERKPYSCGICGKHFRQIAQLRVHNRLHTGERPYACTECDQRFRTKATMDQHYITLHTDNYPHECPYCNKRFKRLHSSNCHKKTHTGECPHVCRICHRAFAQKGDMLKHMKIHNQRDLDSHFRRAHNQSSNSDFLKESTTDTEDSEWMTEVDCSEEDITNDYLMSDDELRTEYN
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00291763;
- 90% Identity
- iTF_00254565;
- 80% Identity
- -