Cfil006285.1
Basic Information
- Insect
- Calameuta filiformis
- Gene Symbol
- -
- Assembly
- GCA_030142265.1
- Location
- JARQSU010000385.1:88351-90403[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 13 0.0057 0.43 11.3 1.3 1 23 122 144 122 144 0.97 2 13 5.8 4.3e+02 1.8 1.1 1 21 181 201 181 204 0.83 3 13 0.0029 0.22 12.2 1.9 1 23 314 336 314 336 0.99 4 13 0.34 26 5.7 0.8 2 23 350 372 349 372 0.94 5 13 0.033 2.4 8.9 7.7 2 23 379 400 378 400 0.97 6 13 0.00065 0.049 14.2 1.9 1 23 409 432 409 432 0.98 7 13 0.031 2.3 8.9 2.1 1 23 447 470 447 470 0.94 8 13 1.7e-06 0.00013 22.3 1.3 1 23 476 499 476 499 0.96 9 13 0.016 1.2 9.8 0.8 3 23 506 527 504 527 0.94 10 13 0.0017 0.13 12.9 0.2 1 23 532 555 532 555 0.97 11 13 2.3e-08 1.7e-06 28.2 0.4 2 23 562 583 561 583 0.97 12 13 6.9e-07 5.2e-05 23.6 0.4 1 23 589 611 589 611 0.97 13 13 4.8e-07 3.6e-05 24.1 0.1 1 23 617 639 617 639 0.98
Sequence Information
- Coding Sequence
- ATGGAAAGGCAAAGAAGCGGAGCTGCTGCTGGACGCGAGGGAAGAGGCAGGAGGAGATTGCTCAAAAGCGACGCGTACGGCTGCTTCGTTCTAGGAGATAATTCGATGCCGATGAGACTGTGCCAGCTGTCCGACTCCCATGGGAATCTCCGTTACTCGCTGGTCCCGGCATCGGATGACTCTTCGGGAAGGACCAGCAGACAGCAGGAACTCATCGTGTCGAGCGACATCAAGGTTGAGGTGGCTGAAGAGTTTACGGGAGTCGGTGGGACTGCAGGGAAGTCTGAGCAGGCGGAGCTCTCTAGCGAGGAGAGTCGTTACTTGGGCTCACTCGCTCATCTTTGCGAAGTGGCCATCGAGTGCTTCTCTTGTGACACGTGCACTATGAAGTTTCCCGTAGAGAGTATGCTGCTCAGACACAAGTTTCGCCACAGGCGAAACTTTCGAACAAGACGATCGTTCGTGCGGAATAAGAAAATCTCTTCGTCCCAAAATTTACGGGGCAGCTTCAGCGAGGCTCGTTCGCCAAACGATCCTATCTACATGTGTCGGCTCTGCAACTTCCGGTGCGACAGGCGAGCCATTCTGAGCTCACACGTCGCAGCGAAGCATTCCTCCGCTCAGCTGGAGAAGGAAGTACCGGATTCTCGTACCTGCTCCGATTGGGAATCACGTACCATCGAAACATCCAACAGACGGCAGACCTCTAAGCGGCTGAAAAAGAGAGGGGAAACGCGTCAAGCGCCGGAAGAGAAGACCAAGCGTTGCGGCGACAGTCTCAATGTCGACGATAACGATGAGAACGATGAGAACGATGCACAGAGTCTAGACGGTAATATGGAAGAAGAGATAGGGGAAGCCGAGGAGAAAGACGAAGACAAAGTTGAAGGGGAAGATGATGGCGAAAGTAAGAAGGGACTTGAGCAGGCTGAGAGGAATTATCGGTGCGACGCGTGCTCGTTCGAAACCAGCCGAAATGACAAATATAAGAAACACTTGAGGATACACAAGCGACGACACGGAACGAGTCCTCGAGGGATGATCCTGTCGTGCGGTCGCTGCGATTTTCGGTGCAAGAACGTCCCCACTCTGGATGCGCACATCGCCCGAAAGCACCAAGTCGATGAGCAGTGCCAATGCAACGTTTGCGACTTCAAGTGCGCGAAGAAGAGCACCTTGTACTCGCACAAGAGGAGGCATCGGATCCAGGAACTCGGAAACATGTACTCGTGCAACGAGTGCGGCTTCAAGACCGGGAACAAGACCAGCCTCTACTCGCACATTAAGCGGAAGCACAAGTCGACTCGTTCGGCGTCAGGCGTCAAGGCGcccgaatttttcttttgcaatcAGTGCGACtacaagaataaaaacaagTACGAGCTGAAGGTTCACGTTGCACGAAAGCACACCGACGACTTCAAATTTTCGTGCGAAACGTGTGgcaaaaaattcaaggtaAAGGGAGATCTGACCAATCACATAAGGTTCACTCACAAGGAGCAACCTGTAATCTGTGACGTTTGCGGCAAGACCTGCCTCAACAGCAACTCCTTGTACGTACATCAGAAATTCGCCCACTACAAGGCCAAGTACGAGTGCGGCATCTGCAAGCGACGCATGGTGAGTCAAGAGAATCTGGACGAGCACATGCTGCGTCAGCACGAGAAGCGGGAGAACGTCGTGTGCGAGGAGTGCGGCAAGACCTTTTCCCGGAACAGTCGGCTAAAGGTGCACATGAGGATTCACACTGGCGACAAGCCCTACGCCTGCACGATCTGCAACAAGTCCTTTGCTCGGCGCACCGCCCTTAAGCAGCACCTCCTCATACACACCGGAGTGAGACCTTACGTGTGCGACATTTGCGGCAAGGCCTTCACGCAAAAACCCGGACTCATCAGCCACCGGAAGTCTCATCCTGGATCTCATCCGCCACTTCCGAGGGTTCTGATAGACCACATCCTGAACGACGTCATGAACAATTGA
- Protein Sequence
- MERQRSGAAAGREGRGRRRLLKSDAYGCFVLGDNSMPMRLCQLSDSHGNLRYSLVPASDDSSGRTSRQQELIVSSDIKVEVAEEFTGVGGTAGKSEQAELSSEESRYLGSLAHLCEVAIECFSCDTCTMKFPVESMLLRHKFRHRRNFRTRRSFVRNKKISSSQNLRGSFSEARSPNDPIYMCRLCNFRCDRRAILSSHVAAKHSSAQLEKEVPDSRTCSDWESRTIETSNRRQTSKRLKKRGETRQAPEEKTKRCGDSLNVDDNDENDENDAQSLDGNMEEEIGEAEEKDEDKVEGEDDGESKKGLEQAERNYRCDACSFETSRNDKYKKHLRIHKRRHGTSPRGMILSCGRCDFRCKNVPTLDAHIARKHQVDEQCQCNVCDFKCAKKSTLYSHKRRHRIQELGNMYSCNECGFKTGNKTSLYSHIKRKHKSTRSASGVKAPEFFFCNQCDYKNKNKYELKVHVARKHTDDFKFSCETCGKKFKVKGDLTNHIRFTHKEQPVICDVCGKTCLNSNSLYVHQKFAHYKAKYECGICKRRMVSQENLDEHMLRQHEKRENVVCEECGKTFSRNSRLKVHMRIHTGDKPYACTICNKSFARRTALKQHLLIHTGVRPYVCDICGKAFTQKPGLISHRKSHPGSHPPLPRVLIDHILNDVMNN
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01473369;
- 90% Identity
- iTF_00254548;
- 80% Identity
- -