Cfil006366.1
Basic Information
- Insect
- Calameuta filiformis
- Gene Symbol
- -
- Assembly
- GCA_030142265.1
- Location
- JARQSU010000385.1:789851-792525[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 11 0.033 2.5 8.9 0.0 1 23 359 381 359 381 0.95 2 11 6.8e-06 0.00051 20.4 1.2 3 23 450 470 449 470 0.97 3 11 0.00012 0.0089 16.5 0.2 1 23 476 498 476 498 0.98 4 11 0.00047 0.035 14.6 2.4 1 23 504 526 504 526 0.98 5 11 8.4e-06 0.00063 20.2 1.3 1 23 532 554 532 554 0.98 6 11 0.00033 0.025 15.1 1.3 1 23 560 582 560 582 0.98 7 11 6.1e-07 4.6e-05 23.7 0.5 1 23 590 612 590 612 0.98 8 11 0.0056 0.42 11.3 0.2 1 23 618 640 618 640 0.94 9 11 1.8e-05 0.0013 19.1 2.2 1 23 646 668 646 668 0.98 10 11 2.5e-05 0.0018 18.7 0.6 1 23 674 696 674 696 0.98 11 11 0.0011 0.081 13.5 5.2 1 23 702 724 702 725 0.95
Sequence Information
- Coding Sequence
- ATGGCCGTCGTCGAGGAATTCGATTACTTATGTCGGTTGTGTGCAACCAAGACAGGCATCCTGATGGGGCTGCCGATTTTTGAAGCCGGTGATCAGATGCGTAACATTGACAAGAAAATCGCTGCCTGTCTTCCCGTTCAGGTATCGATGACTGATCAGTTGCCAAAAGTTGTTTGCGAGGAATGTGCATACAAATTGGATCAGTTATTTGATTTTCGTGAGAAGTGTTTGCATACCGAGGGTATGTTCATGGAAATGCTTAAGGAAATCAGTAAAGATGATGTTGTACACATCGACCATAATCTTGAAGAAGTCGACGACATACCTGTCATGCAAACAACCATTAATACAATGCAAACAGATATCGAGGAGATACAGAATCATGCCAGTAGAACGCAACACGATACTGATGAAGCTGCAATGCATACTATGCAGGTAATGGATGAAATGGACTTGGCAGGTGGAGAGCAAGTTGTTACGCAGGAAGATATTGCGCAACAGGAGGGGGACATCGAGGTTACTGGCATTGACTGTTTGGATGGCGATACTGTTCGGATGGTCGATGAGCATATTAGAGAAGTTTCAAATCATCAAATCGCAATGCACCTAGAAGGAGACATGACTGTGGTGAGCAACCTGACAGTTGGCGATCATCTTGATCAGTTGGGCATAAACTATGTAACTTCTATCAGCCCTCAGGATCAAAACAGAGAGCAGATAGTTCACTACTGTGAAAATGTTAAGTATGAACCTGTGACGGTAAAGGAGGAATACCAAAGGTTACAGGAGCGGTTAACCGTAGATGCTCCAACACACTCTATTgagaataatGTAACCACCGACGAGTTTCCTCCTTCGCACGCAGAAACGGACAGTGAAATCGAAGAGTCGGGTGTCAGTGAAAACGAAACTCACGAGAATTCCGATCCTCTGCATACAAACGCGCTGCCTTCCACGAGTCAAGTAACGACCGAAAGTTCAACAATAATGGTAGAGTACTCAAAGAGAACAAAACATTCTTTGCTTGACACAACCCTGAACAATCCGACTATAGATGAAACCGGAGCAAACTGGTACGTCTGTCCATTCTGTAACGAAGCAGCAACAGAGCCCAACAATCTCGTGGTGCACTTCGAGCAACATTTCTGTTGTTGCCCATGTGGACTGTACTTCACTAGCGTGGAAGTACTGAACATTCACAAGCAGCAGTGCGATTTGTACAAGAGCAAGAGCATCATAAAGGAAGACATGGTTGCCGAAGCAGATGCAGATACAGTAGCGAACAACGTGAATCAGGATGAGCAGAAGAAGCAGCCAGCTGTCAGACAAAAGTGGACGCCAAAAATTTGTGCCCAGTGCGGCAAACAGTACAGAACCAATTACAAGCTCCAAGAACACATGCGCAAGCACACCGGTGAAAAGCCGTTTCAGTGTCTCCTCTGCGAGAAAGCATTTCGCAGCAAGATCGGATTGGCCCAGCACACGGCGACGCACACGGGTCAGTTCGACTACAATTGCTCGACCTGCGGCAAAGGTTTCCAGTGCAAGAGTTATCTGATCGTCCACCAGAGGGTGCACTCTGACCTAAAGCCGTACCCGTGCAGCACGTGTGGACAGAACTTCAAAACGAAACAGTCTCTTCTGGACCACCAGAACAGACACCTAGGAGTGAAACCGTACATGTGTGAGATATGCGGTCGCGGATTCATAACGAAGGGTCTCTGCAAGAGTCACCAGAAGATCCACTCGGGTATGGACAACCGGCAGTATCCCTGCGTCGTTTGCAACAAGATGTTCGTCAGCAAGAGCTACCTGAACACTCACCTCAGGATTCACACCGGTGAGAAGCCCTACCTCTGCGAAGTCTGCGGCAAGGGTTTCCTGACCCGCGTCGACCTCAAGATACACTCGACGATGCACACGGGGGAGAAGAGTTTCAAGTGCGAGATGTGCGGCAAAGTGTTCGCGAGACGCGCCGCCCTGCGCTGTCACAGACGCTCTCATACAGGTGAGCGTCCTTACAGGTGCGACGTTTGCGGTAAAACGTTCACCCAGTTCAGCCCAATGGCAATTCACAAGCGGCTCCACACCGGTGAGCGTCCTTACGAGTGCGACGTGTGTGGAAAATCCTTTGTCTCGAGGTCGACCATGATGTGTCACAGGAAGAAGCATCATTTGCCAGCTGCGTCCGGTCCCAAGGAAGTGATGGTCGTTCACGAGGACGCTGAGGCTACGGACATCATGTCCACGGAAATTGTCCTCAGGGAGTCGCATGAGGGCATTCAAATTACTGCCGATTAA
- Protein Sequence
- MAVVEEFDYLCRLCATKTGILMGLPIFEAGDQMRNIDKKIAACLPVQVSMTDQLPKVVCEECAYKLDQLFDFREKCLHTEGMFMEMLKEISKDDVVHIDHNLEEVDDIPVMQTTINTMQTDIEEIQNHASRTQHDTDEAAMHTMQVMDEMDLAGGEQVVTQEDIAQQEGDIEVTGIDCLDGDTVRMVDEHIREVSNHQIAMHLEGDMTVVSNLTVGDHLDQLGINYVTSISPQDQNREQIVHYCENVKYEPVTVKEEYQRLQERLTVDAPTHSIENNVTTDEFPPSHAETDSEIEESGVSENETHENSDPLHTNALPSTSQVTTESSTIMVEYSKRTKHSLLDTTLNNPTIDETGANWYVCPFCNEAATEPNNLVVHFEQHFCCCPCGLYFTSVEVLNIHKQQCDLYKSKSIIKEDMVAEADADTVANNVNQDEQKKQPAVRQKWTPKICAQCGKQYRTNYKLQEHMRKHTGEKPFQCLLCEKAFRSKIGLAQHTATHTGQFDYNCSTCGKGFQCKSYLIVHQRVHSDLKPYPCSTCGQNFKTKQSLLDHQNRHLGVKPYMCEICGRGFITKGLCKSHQKIHSGMDNRQYPCVVCNKMFVSKSYLNTHLRIHTGEKPYLCEVCGKGFLTRVDLKIHSTMHTGEKSFKCEMCGKVFARRAALRCHRRSHTGERPYRCDVCGKTFTQFSPMAIHKRLHTGERPYECDVCGKSFVSRSTMMCHRKKHHLPAASGPKEVMVVHEDAEATDIMSTEIVLRESHEGIQITAD
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00296225;
- 90% Identity
- iTF_00296225;
- 80% Identity
- -